diekhans / gencode-backmap
Mapping of GENCODE gene annotation set files to older assembies
☆11Updated last year
Related projects: ⓘ
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- gnomAD browser pre-ASHG 2018☆33Updated 3 years ago
- Useful tools for working with Salmon output☆36Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- simple library for dealing with SAM cigar strings☆40Updated 3 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆28Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- The Zavolab Automated RNA-seq Pipeline☆33Updated 3 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆40Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆40Updated 4 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 2 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆15Updated 4 months ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- A new workflow for the custom design of CRISPR libraries.☆21Updated last year
- ☆23Updated 6 years ago
- Mapped QC analysis program☆41Updated 6 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆24Updated 3 months ago
- VEP Plugin to annotate high-impact five prime UTR variants☆24Updated 3 weeks ago
- Modify existing reference fasta and gff3/gtf files to include a new sequence☆29Updated last month
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- ☆33Updated last week
- ☆23Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆44Updated this week
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago