WGLab / SCOTCHLinks
Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing
☆16Updated 3 weeks ago
Alternatives and similar repositories for SCOTCH
Users that are interested in SCOTCH are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- R package to detect splicing QTLs (sQTLs)☆13Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- Micro DNA identification☆24Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- ☆34Updated this week
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆23Updated 2 years ago
- ☆22Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆31Updated last week
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆17Updated last year
- ☆32Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated last month
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated 2 weeks ago
- Tutorial Website☆60Updated 4 years ago
- ☆17Updated 6 years ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ☆63Updated last month
- Statistically Significant loops from HiChIP data☆46Updated last year
- RNA editing tests☆17Updated 5 years ago
- ☆22Updated 5 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago