asmitapoddar / Deep-Learning-DNA-SequencesLinks
Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural network architectures (CNN, LSTM, Attention).
☆25Updated 5 years ago
Alternatives and similar repositories for Deep-Learning-DNA-Sequences
Users that are interested in Deep-Learning-DNA-Sequences are comparing it to the libraries listed below
Sorting:
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆25Updated 3 months ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- R tool to analyse and integrate multiple -omics data☆15Updated 6 months ago
- CLUMPS adapted to post-translational modifications.☆10Updated 7 months ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆15Updated 4 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- ☆28Updated 8 months ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆19Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week
- A collection of useful functions for bioinformatics data analysis☆24Updated 2 weeks ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- DRUGZ software☆25Updated 4 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆16Updated 3 years ago
- ☆38Updated 2 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Updated 4 years ago
- ☆83Updated last month
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…☆27Updated 2 years ago
- ☆36Updated 10 months ago
- ☆33Updated 3 years ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆32Updated last year