Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural network architectures (CNN, LSTM, Attention).
☆25Nov 16, 2020Updated 5 years ago
Alternatives and similar repositories for Deep-Learning-DNA-Sequences
Users that are interested in Deep-Learning-DNA-Sequences are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the ge…☆13Jul 8, 2021Updated 4 years ago
- Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences☆15Dec 9, 2016Updated 9 years ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 3 months ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated last year
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- Tackle data analytics and machine learning challenges and build complex applications with R 3.5☆22Jan 30, 2023Updated 3 years ago
- [Briefings in Bioinformatics'20] Integrating multi-network topology for gene function prediction using deep neural networks☆14Sep 5, 2019Updated 6 years ago
- ASGARD is a tool that allows via an automated MD workflow to perform MD protein or protein-ligand complex analysis and to generate the co…☆18Jul 11, 2024Updated last year
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆23Apr 25, 2021Updated 5 years ago
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated 11 months ago
- ☆18Mar 31, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆26May 16, 2025Updated 11 months ago
- ☆18Dec 5, 2024Updated last year
- Long disorder consensus predictor☆23Sep 2, 2025Updated 8 months ago
- ☆19Aug 29, 2025Updated 8 months ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- This is for the AI enzyme design course☆19Nov 10, 2025Updated 5 months ago
- A biological dual-language foundation model☆12Jun 16, 2025Updated 10 months ago
- Protocols for running MD simulations in Gromacs☆10Jun 18, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated last month
- Supporting Information for "Prediction of Organic Compound Aqueous Solubility Using Interpretable Machine Learning"☆13Jun 5, 2023Updated 2 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- 基于Pytorch的知识蒸馏(中文文本分类)☆22Jan 12, 2023Updated 3 years ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- ☆18Jun 20, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Implementation for Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Jul 15, 2024Updated last year
- Exploring Isoform-specific interactions☆13Sep 16, 2025Updated 7 months ago
- ☆21May 30, 2025Updated 11 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- ☆18Jan 2, 2025Updated last year
- ☆16Mar 1, 2025Updated last year
- DeepSoluE☆17Sep 18, 2023Updated 2 years ago