asmitapoddar / Deep-Learning-DNA-SequencesLinks
Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural network architectures (CNN, LSTM, Attention).
☆24Updated 4 years ago
Alternatives and similar repositories for Deep-Learning-DNA-Sequences
Users that are interested in Deep-Learning-DNA-Sequences are comparing it to the libraries listed below
Sorting:
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Updated 3 years ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆14Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- ☆48Updated 2 years ago
- ☆60Updated last week
- CLUMPS adapted to post-translational modifications.☆9Updated last month
- ☆66Updated 4 months ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 months ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆50Updated 2 years ago
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆38Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- DRUGZ software☆23Updated 3 years ago
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆27Updated last month
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- ☆15Updated 2 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Updated 2 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated 2 weeks ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- ☆17Updated 8 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 5 months ago
- A continually expanding collection of RNA-seq tools☆50Updated 8 months ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago