Alternatives and similar repositories for fastqsplitter

Users that are interested in fastqsplitter are comparing it to the libraries listed below

• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 10 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆65Updated 3 weeks ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆45Updated 3 years ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆99Updated 2 months ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆42Updated last year
• Linlab-slu / TSSr
  ☆11Updated last month
• srbehera / DRAGEN_Analysis
  ☆38Updated last year
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆41Updated 2 years ago
• XiaoTaoWang / EagleC
  A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps
  ☆61Updated 5 months ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• wangjr03 / FLAMINGO
  ☆21Updated last year
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆15Updated last year
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• MatthiasLienhard / isotools
  IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
  ☆27Updated 2 years ago
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆74Updated 2 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆64Updated last year
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆23Updated 3 months ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated 2 years ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆34Updated 2 years ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆71Updated 2 weeks ago
• tgen / bisbee
  alternative splicing analysis pipeline
  ☆20Updated 4 years ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆64Updated 3 weeks ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• gagneurlab / absplice
  ☆39Updated 7 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆43Updated 3 months ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆63Updated 8 months ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated 5 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• dieterich-lab / single-cell-nanopore
  Workflow for Nanopore Sequencing of 10x single cell libraries
  ☆19Updated 10 months ago