broadinstitute / longbowLinks
Annotation and segmentation of MAS-seq data
☆20Updated 2 years ago
Alternatives and similar repositories for longbow
Users that are interested in longbow are comparing it to the libraries listed below
Sorting:
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- ☆34Updated 2 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆65Updated last week
- simplified cellranger for long-read data☆19Updated 5 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- Micro DNA identification☆23Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- ☆13Updated 3 years ago
- A program for the analysis of single cell nanopore long read data☆20Updated 7 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 6 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆42Updated 3 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- RAGE-seq scripts☆18Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 10 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated last week
- ☆24Updated last year
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Updated 10 months ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 11 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Updated last week
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- ☆38Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- IDR☆30Updated 2 years ago