Alternatives and similar repositories for gencode_utr_fix

Users that are interested in gencode_utr_fix are comparing it to the libraries listed below

• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆30Updated last year
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• GoekeLab / bambu-singlecell-spatial
  Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu
  ☆12Updated 2 weeks ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated last month
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆19Updated last week
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 4 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last week
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆16Updated last year
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆35Updated 2 weeks ago
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 9 months ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 2 months ago
• plasslab / SCALPEL
  Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.
  ☆14Updated this week
• Xinglab / rMATS-long
  ☆28Updated 5 months ago
• zanglab / SICER2
  ☆22Updated 3 months ago
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆26Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 5 months ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• TheJacksonLaboratory / splicing-pipelines-nf
  Repository for the Anczukow-Lab splicing pipeline
  ☆15Updated 2 months ago
• daisybio / NEASE
  A network-based approach for exon set enrichment
  ☆15Updated 2 months ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 3 weeks ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆19Updated 2 months ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆30Updated last year
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆28Updated 2 months ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated last year
• gagneurlab / absplice
  ☆39Updated 8 months ago