Alternatives and similar repositories for gencode_utr_fix:

Users that are interested in gencode_utr_fix are comparing it to the libraries listed below

• zanglab / SICER2
  ☆21Updated 2 months ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆30Updated last year
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 3 months ago
• LappalainenLab / lorals
  ☆33Updated 2 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• TRON-Bioinformatics / splice2neo
  R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
  ☆14Updated last week
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆26Updated 2 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated 3 weeks ago
• songlab-cal / scquint
  ☆17Updated 10 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆22Updated last year
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated last month
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆61Updated last year
• StatBiomed / CamoTSS
  Detection and couting alternative TSS in single cells
  ☆14Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 4 months ago
• hoffmangroup / umap
  ☆26Updated 3 weeks ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆18Updated last month
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 5 years ago
• mortazavilab / cerberus
  ☆19Updated 8 months ago
• Vivianstats / MAAPER
  Model-based analysis of APA using 3' end-linked reads
  ☆9Updated 3 years ago
• ClarkLaboratory / IsoVis
  IsoVis enables fast and informative visualization of isoform structures and expression levels.
  ☆9Updated 3 months ago
• TheJacksonLaboratory / splicing-pipelines-nf
  Repository for the Anczukow-Lab splicing pipeline
  ☆15Updated last month
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• Xinglab / rMATS-long
  ☆28Updated 4 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 7 months ago