Alternatives and similar repositories for gencode_utr_fix

Users that are interested in gencode_utr_fix are comparing it to the libraries listed below

• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆64Updated 7 months ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆41Updated 2 months ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆32Updated 2 years ago
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆21Updated last week
• plasslab / SCALPEL
  Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.
  ☆30Updated last month
• gagneurlab / absplice
  ☆40Updated 5 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated 2 years ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated last year
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 11 months ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆28Updated 2 years ago
• mhalushka / miRge
  miRge - microRNA alignment software for small RNA-seq data, now at v2.0
  ☆27Updated 3 years ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated 2 years ago
• hoffmangroup / umap
  ☆30Updated 5 months ago
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆65Updated last year
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 6 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 4 months ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 3 weeks ago
• zanglab / SICER2
  ☆23Updated 10 months ago
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆43Updated 4 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• rraadd88 / beditor
  A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
  ☆19Updated last year
• Xinglab / rMATS-long
  ☆34Updated last month
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆25Updated 4 months ago
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆22Updated last month
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago