bendemeo / hopperLinks
Diverse sampling for single-cell datasets
☆16Updated 5 years ago
Alternatives and similar repositories for hopper
Users that are interested in hopper are comparing it to the libraries listed below
Sorting:
- High-definition modeling of chromatin + transcriptomics data☆26Updated 2 weeks ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Updated last week
- ☆18Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Updated 3 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- ☆23Updated last year
- ☆17Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 10 months ago
- Code for reproducing the Sei manuscript results☆17Updated 4 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- RNA-binding protein motif analysis☆10Updated 4 months ago
- University of Cambridge PhD thesis☆16Updated 5 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- Transcription Factor Enrichment Analysis☆36Updated 2 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- ☆39Updated 7 months ago
- Comprehensive and scalable differential splicing analyses☆18Updated last month
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- BAGEL software☆28Updated 2 years ago
- ☆19Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 11 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 4 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago