bendemeo / hopperLinks
Diverse sampling for single-cell datasets
☆16Updated 5 years ago
Alternatives and similar repositories for hopper
Users that are interested in hopper are comparing it to the libraries listed below
Sorting:
- High-definition modeling of chromatin + transcriptomics data☆25Updated 6 months ago
- ☆18Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 7 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last week
- 🧪 Optimized protocol for m6A-SAC-seq☆11Updated 4 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- RNA-binding protein motif analysis☆11Updated last month
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆28Updated 2 years ago
- ☆19Updated 2 years ago
- Transcription Factor Enrichment Analysis☆36Updated last month
- ☆16Updated last year
- ☆11Updated 3 years ago
- ☆23Updated 9 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 9 months ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 8 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 4 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆30Updated 9 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 3 years ago
- ☆20Updated 5 months ago
- ☆39Updated 3 months ago
- University of Cambridge PhD thesis☆16Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 5 months ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Toolkit for single-cell DNA methylation analysis.☆43Updated 2 weeks ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last month
- Molecular interactions inference from single-cell multi-omics data☆27Updated last week