bendemeo / hopper

Related projects: ⓘ

• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆32Updated 5 months ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆17Updated last month
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆13Updated 3 months ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆41Updated last year
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 4 years ago
• songlab-cal / scquint
  ☆15Updated 3 months ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆35Updated 2 months ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆24Updated 3 years ago
• shendurelab / MPRAflow
  A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
  ☆29Updated 7 months ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆19Updated 3 months ago
• aryarm / varCA
  Use an ensemble of variant callers to call variants from ATAC-seq data
  ☆23Updated 2 years ago
• cbg-ethz / scIsoPrep
  Single-cell Iso Prep
  ☆11Updated 10 months ago
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆41Updated 2 years ago
• matsengrp / gapml
  ☆11Updated 3 years ago
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆10Updated 2 years ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆24Updated 7 months ago
• czbiohub / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 3 years ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆39Updated 2 years ago
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆15Updated 3 years ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆26Updated 2 years ago
• seasoncloud / Alleloscope
  Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…
  ☆26Updated last year
• WGLab / LongGF
  A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
  ☆22Updated 3 years ago
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆27Updated last year
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆26Updated last year
• lcmmichielsen / scHPL
  ☆34Updated 4 months ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆29Updated 2 months ago
• jacobhepkema / scover
  scover
  ☆22Updated 10 months ago
• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆22Updated last year
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆23Updated 2 months ago
• caleblareau / mitoblacklist
  Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
  ☆16Updated 2 years ago