ConesaLab / SQANTI3Links
Tool for the Quality Control of Long-Read Defined Transcriptomes
☆243Updated last week
Alternatives and similar repositories for SQANTI3
Users that are interested in SQANTI3 are comparing it to the libraries listed below
Sorting:
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆226Updated 4 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆267Updated last week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated last month
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆192Updated last week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆274Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆284Updated last week
- Full-Length Alternative Isoform analysis of RNA☆239Updated last week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆251Updated last month
- ☆279Updated 3 weeks ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated last week
- Fast alignment and preprocessing of chromatin profiles☆206Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆282Updated 9 months ago
- Download FASTQ files from SRA or ENA repositories.☆350Updated 4 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated 3 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- ☆157Updated 3 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆180Updated last week
- ATAC-seq peak-calling and QC analysis pipeline☆213Updated this week
- Technology agnostic long read analysis pipeline for transcriptomes☆152Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Detecting sites of genomic enrichment☆196Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆143Updated 2 months ago
- Tool for plotting sequencing data along genomic coordinates.☆321Updated 4 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆162Updated 2 years ago
- ☆153Updated 5 months ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆175Updated last year
- parallel fastq-dump wrapper☆299Updated 2 years ago
- Documentation for the ANNOVAR software☆245Updated 3 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆227Updated 6 months ago