R package to detect splicing QTLs (sQTLs)
☆13Jul 3, 2023Updated 3 years ago
Alternatives and similar repositories for sQTLseekeR2
Users that are interested in sQTLseekeR2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Non-parametric, asymptotic P-value computation for multivariate linear models☆16Oct 16, 2023Updated 2 years ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆17Mar 1, 2022Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Mapping of GENCODE gene annotation set files to older assembies☆14Apr 16, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- ☆18Jan 17, 2019Updated 7 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 9 years ago
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- ☆39Apr 25, 2023Updated 3 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 3 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆24Dec 10, 2025Updated 7 months ago
- ☆10Sep 26, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ENCODE long read RNA-seq pipeline☆52Apr 13, 2026Updated 3 months ago
- ☆37Jun 26, 2026Updated last month
- An automated ChIP-seq pipeline using Nextfow☆18Oct 6, 2022Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- ☆27May 8, 2022Updated 4 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆143Jun 28, 2024Updated 2 years ago
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆25Oct 19, 2023Updated 2 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A modular, containerized pipeline for ATAC-seq data processing☆60Jul 18, 2026Updated last week
- ☆13Nov 5, 2023Updated 2 years ago
- ☆15Apr 8, 2026Updated 3 months ago
- 2023年暑期托福学习资料汇总☆11Apr 23, 2024Updated 2 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Jan 6, 2026Updated 6 months ago
- This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI…☆20Jul 3, 2024Updated 2 years ago
- ☆10Sep 20, 2022Updated 3 years ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A multi-ancestry polygenic risk score approach☆22Jul 20, 2024Updated 2 years ago
- Python script for creating and analyzing simulated bpp datasets published in Flouris et al. 2019.☆10May 12, 2019Updated 7 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 5 months ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 6 months ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- Connecting AI to biomedical data☆15May 14, 2026Updated 2 months ago