guigolab / sQTLseekeR2

Related projects ⓘ

Alternatives and complementary repositories for sQTLseekeR2

• LappalainenLab / lorals_paper_code
  ☆24Updated 2 years ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆26Updated 5 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆35Updated 3 years ago
• compbiolabucf / AS-Quant
  Quantitation and visualization of differential alternative splicing events
  ☆9Updated last year
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆21Updated last week
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆36Updated 2 years ago
• liucongcas / GLORI-tools
  bioinformatic pipeline for GLORI
  ☆18Updated 6 months ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆10Updated 2 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆31Updated 2 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆56Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated last year
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆26Updated 3 months ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆17Updated 4 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆40Updated 7 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆18Updated last year
• cphgeno / CNVbench
  Benchmarking of CNV calling tools
  ☆18Updated 5 years ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆22Updated 7 months ago
• nloyfer / UXM_deconv
  ☆37Updated last year
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆31Updated 5 years ago
• zhqingit / giremi
  GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
  ☆42Updated 7 years ago
• mortazavilab / cerberus
  ☆16Updated 3 months ago
• LappalainenLab / lorals
  ☆33Updated last year
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆21Updated 3 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated 3 months ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆23Updated 4 months ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated 8 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• weng-lab / ENCODE-cCREs
  Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
  ☆19Updated this week