MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
☆13Jun 9, 2026Updated 4 months ago
Alternatives and similar repositories for mercat2
Users that are interested in mercat2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆67Apr 22, 2026Updated 6 months ago
- Repository for GreeningLab metabolic marker gene databases☆15May 28, 2026Updated 5 months ago
- Comprehensive database for diazotroph nitrogenases, alternative nitrogenases, and nitrogenase-like enzymes at the University of North Car…☆16Oct 18, 2026Updated 2 weeks ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆20Aug 7, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 4 years ago
- R package for distilling functional annotations of bacterial genomes and metagenomes☆12Feb 27, 2025Updated last year
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- ☆14Sep 2, 2021Updated 5 years ago
- ☆15Oct 14, 2023Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated 5 months ago
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 4 months ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆11May 17, 2024Updated 2 years ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 10 months ago
- ☆11Jun 2, 2025Updated last year
- CZID (formerly IDseq) infectious disease command-line interface☆23Apr 8, 2026Updated 6 months ago
- ☆10Sep 2, 2026Updated 2 months ago
- UFCG: Universal Fungal Core Genes☆37Jul 29, 2025Updated last year
- ☆20Apr 24, 2025Updated last year
- Normalized Stochasticity Ratio in community assembly☆31Oct 22, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- A graphical interface for sklearn classification to introduce machine learning to biologists☆14Mar 19, 2025Updated last year
- A linear decomposition model for testing microbiome association and mediation☆14Sep 7, 2023Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 4 months ago
- A collection of easy-to-use custom ggplot2-based functions for data exploration and analysis. Each function handles data preprocessing an…☆27Dec 23, 2025Updated 10 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated last year
- Render and publish your Quarto projects.☆18Dec 1, 2022Updated 3 years ago
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to reconstruct ancestral networks inferred with RevBayes☆13Apr 20, 2026Updated 6 months ago
- Build a map of genes present across a set of microbial genomes☆18Updated this week
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 6 years ago
- The binning tool with dynamic contrastive learning and deep language model☆26Oct 21, 2026Updated last week
- ☆11Feb 9, 2024Updated 2 years ago
- Toolbox for comparative genomics of MAGs☆93Oct 22, 2026Updated last week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆34Dec 4, 2025Updated 10 months ago