CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
☆34Jul 24, 2025Updated last year
Alternatives and similar repositories for celllens
Users that are interested in celllens are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Apr 8, 2025Updated last year
- ☆19Sep 19, 2025Updated 11 months ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆19Feb 5, 2023Updated 3 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆55Aug 11, 2025Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆154Aug 21, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 3 months ago
- ☆22Jul 21, 2025Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆134Updated this week
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆90Jul 4, 2026Updated 2 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Jan 9, 2026Updated 7 months ago
- ☆14Apr 27, 2022Updated 4 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆76Nov 4, 2024Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆55Oct 31, 2024Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated 2 months ago
- ☆22Nov 9, 2023Updated 2 years ago
- ☆49Oct 29, 2025Updated 10 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆189Updated this week
- ☆34Feb 25, 2025Updated last year
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 8 months ago
- Helper functions for working with inForm data.☆25May 3, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20Jan 23, 2026Updated 7 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆291Updated this week
- ☆62Aug 6, 2025Updated last year
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆29Mar 11, 2025Updated last year
- ☆62Jan 9, 2026Updated 7 months ago
- Analyzing cellular niches in spatial transcriptomics data☆38Nov 18, 2024Updated last year
- ☆15Jun 27, 2025Updated last year
- ☆19Updated this week
- CAST package☆43Oct 26, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assembly and Annotation of the Human Immune Health Atlas☆29Aug 28, 2025Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆30Sep 6, 2024Updated last year
- ☆16Feb 28, 2025Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆82Feb 10, 2026Updated 6 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Jun 21, 2026Updated 2 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆24Jul 30, 2026Updated last month
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆93Jun 24, 2024Updated 2 years ago