broadinstitute / gtex-single-nucleus-reference
Code repository for the snRNA-seq cross-tissue atlas project
☆20Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for gtex-single-nucleus-reference
- Functions for single cell data analysis☆27Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- ☆30Updated 7 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- ☆42Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- scWGCNA☆55Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last month
- Gene Set + S2G strategy annotations analyzed for disease architecture☆47Updated 2 years ago
- ☆27Updated 3 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- ☆41Updated 3 months ago
- ☆37Updated 2 months ago
- ☆29Updated last year
- ☆39Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆64Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- ☆37Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated last month
- ☆46Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- SCDC☆42Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago