broadinstitute / gtex-single-nucleus-referenceLinks
Code repository for the snRNA-seq cross-tissue atlas project
☆21Updated 3 years ago
Alternatives and similar repositories for gtex-single-nucleus-reference
Users that are interested in gtex-single-nucleus-reference are comparing it to the libraries listed below
Sorting:
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- ☆50Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated last week
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 11 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- scWGCNA☆61Updated 2 years ago
- ☆39Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- ☆43Updated 4 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆37Updated 7 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆55Updated 4 years ago
- ☆41Updated 4 years ago
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆88Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 11 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- ☆29Updated 2 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆89Updated 3 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago