KrishnaswamyLab / phateRLinks
PHATE dimensionality reduction method implemented in R
☆81Updated 4 years ago
Alternatives and similar repositories for phateR
Users that are interested in phateR are comparing it to the libraries listed below
Sorting:
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- ☆55Updated 8 months ago
- Clone of the Bioconductor repository for the scater package.☆97Updated 7 months ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆74Updated 3 months ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 6 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Updated 8 years ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 6 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Rphenograph: R implementation of the PhenoGraph algorithm☆49Updated 5 years ago
- Normalization for single cell RNA-seq data☆49Updated 4 months ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆84Updated last month
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- An R interface to enrichR☆93Updated 8 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 2 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 2 weeks ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- Simplify functional enrichment results☆118Updated last year
- Identify and correct invalid gene symbols☆59Updated 11 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆76Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago