KrishnaswamyLab / phateRLinks
PHATE dimensionality reduction method implemented in R
☆79Updated 4 years ago
Alternatives and similar repositories for phateR
Users that are interested in phateR are comparing it to the libraries listed below
Sorting:
- ☆55Updated 4 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated last year
- Clone of the Bioconductor repository for the scater package.☆96Updated 3 months ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆72Updated last month
- Lightweight Iterative Gene set Enrichment in R☆57Updated 8 months ago
- ☆62Updated 3 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆59Updated last week
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆83Updated last month
- Explore and share your scRNAseq clustering results☆50Updated last year
- Normalize CITEseq Data☆66Updated 2 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 2 months ago
- Normalization for single cell RNA-seq data☆47Updated 2 weeks ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 6 months ago
- ☆68Updated 7 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- ☆59Updated 9 months ago
- REVOLVER - Repeated Evolution in Cancer☆65Updated 2 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated last year
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago