Alternatives and similar repositories for cutoff

Users that are interested in cutoff are comparing it to the libraries listed below

• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆15Updated 2 years ago
• MangiolaLaboratory / HPCell
  Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R
  ☆13Updated 5 months ago
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 4 years ago
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 4 years ago
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆22Updated 5 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆21Updated 4 months ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated last month
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆20Updated 10 months ago
• shazanfar / scHOT
  ☆10Updated last year
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆9Updated 4 years ago
• libscran / scran.chan
  A slimmed down version of scran, based on the C++ library of the same name.
  ☆10Updated 7 months ago
• churchill-lab / scRATE
  Bayesian model selection to detect zero-inflated genes
  ☆8Updated 4 years ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated 5 months ago
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 2 years ago
• lsncibb / SummaryAUC
  Calculate AUC based on GWAS summary statistics only
  ☆10Updated 6 years ago
• MarioniLab / scHOT2019
  Instructions and analysis scripts for single cell Higher Order Testing (scHOT)
  ☆9Updated 4 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• jokergoo / BioCartaImage
  BioCarta pathway images
  ☆11Updated last year
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆25Updated last year
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆20Updated 2 months ago
• neilrobertson / LBC_ARCHER
  ☆9Updated 3 years ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• dynverse / dynwrap
  A common data format and inference environment for single-cell trajectories 📦
  ☆16Updated last year
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated last year
• rujinwang / EPIC
  cEll tyPe enrIChment
  ☆14Updated 2 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 3 weeks ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated last month
• zijianni / scCB2
  R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data
  ☆10Updated 2 years ago