kundajelab / gkmexplainLinks
Accompanying repository for GkmExplain paper
☆23Updated 5 years ago
Alternatives and similar repositories for gkmexplain
Users that are interested in gkmexplain are comparing it to the libraries listed below
Sorting:
- GWAS gold standards repository☆39Updated last year
- ☆21Updated 8 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 3 years ago
- Explore the cancer relevance of your gene list☆52Updated 2 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- scover☆24Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- ☆14Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- ☆17Updated last year
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆30Updated last year
- Exon-Intron Split Analysis (EISA) in R☆17Updated 2 weeks ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- Modelling DNA methylation profiles☆23Updated 5 years ago
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated last month
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago