kundajelab / gkmexplain
Accompanying repository for GkmExplain paper
☆22Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for gkmexplain
- Scripts for building computational models of gene regulation with tensorflow☆27Updated last year
- High-definition modeling of chromatin + transcriptomics data☆18Updated 2 weeks ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- ☆14Updated 4 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- ☆19Updated 7 years ago
- ☆16Updated last month
- ☆28Updated last year
- Summary statistics for repertoires☆16Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last month
- ☆10Updated 6 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆24Updated 2 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- scRNAseq integration with triplet neural networks☆39Updated last year
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Updated 5 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆34Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆52Updated 5 years ago
- Regulatory networks with Direct Information in python☆38Updated last year
- ☆50Updated last year
- GWAS gold standards repository☆29Updated 11 months ago
- ☆24Updated 6 years ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- ☆26Updated last year
- Gene Set Enrichment Analysis in Python☆11Updated 6 years ago
- CiteFuse:☆26Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago