kundajelab / gkmexplainLinks
Accompanying repository for GkmExplain paper
☆22Updated 4 years ago
Alternatives and similar repositories for gkmexplain
Users that are interested in gkmexplain are comparing it to the libraries listed below
Sorting:
- ☆19Updated 8 years ago
- GWAS gold standards repository☆37Updated last year
- Mean Alterations Using Discrete Expression☆14Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 2 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- ☆14Updated 5 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- ☆12Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- scover☆23Updated last year
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- cfDNA analysis workflow☆21Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- ☆23Updated 6 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆22Updated 5 years ago
- ☆18Updated 2 months ago