kundajelab / gkmexplainView external linksLinks
Accompanying repository for GkmExplain paper
☆23Aug 20, 2020Updated 5 years ago
Alternatives and similar repositories for gkmexplain
Users that are interested in gkmexplain are comparing it to the libraries listed below
Sorting:
- MAW: a suite on the computation and application of Minimal Absent Words☆16Nov 1, 2021Updated 4 years ago
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆25Aug 17, 2024Updated last year
- ☆14May 26, 2020Updated 5 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- Data Science Research Project: Map poverty using satellite images.☆11Aug 14, 2020Updated 5 years ago
- SV detection from paired end reads mapping☆38Jul 19, 2010Updated 15 years ago
- Deep Feature Interaction Maps (DFIM)☆54Apr 9, 2019Updated 6 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 10 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆14Aug 25, 2025Updated 5 months ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 4 months ago
- ☆11May 30, 2023Updated 2 years ago
- ☆52Nov 14, 2023Updated 2 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- ☆18May 10, 2023Updated 2 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Aug 28, 2019Updated 6 years ago
- Zero-inflated mixture model for single-cell data.☆14Feb 16, 2016Updated 9 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Apr 13, 2021Updated 4 years ago
- Repository for the publication "Deep learning enables pathologist-like scoring of NASH models"☆17Sep 3, 2021Updated 4 years ago
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Ruby library for handling GFA files☆17Jul 10, 2025Updated 7 months ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- Computational biology utility scripts☆19Apr 16, 2025Updated 9 months ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- Robust Allele Specific Quantification and quality controL☆40Dec 13, 2021Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 6 years ago
- Benchmarking data sets for haplotype reconstruction methods, sequenced with Illumina MiSeq, 454/Roche GSJunior, and Pacific Biosciences☆23Feb 21, 2020Updated 5 years ago
- ☆28Aug 7, 2025Updated 6 months ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 2 years ago