Genomic related tools
☆76Nov 13, 2021Updated 4 years ago
Alternatives and similar repositories for Genomic_tools
Users that are interested in Genomic_tools are comparing it to the libraries listed below
Sorting:
- ☆63Mar 14, 2024Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- 整理常用的群体遗传学分析流程和脚本☆120Jan 16, 2026Updated last month
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated this week
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆159Nov 4, 2025Updated 4 months ago
- ☆86Jul 12, 2024Updated last year
- Neural network classification of TE☆97Oct 9, 2025Updated 5 months ago
- ☆26Jan 26, 2026Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- Portable solution to generate genome alignment chains using lastz☆60Dec 20, 2025Updated 2 months ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- Scripts of population genomics analysis☆36May 8, 2018Updated 7 years ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆254Jan 5, 2026Updated 2 months ago
- ☆13Sep 11, 2025Updated 5 months ago
- ☆76Apr 23, 2020Updated 5 years ago
- Synteny and Rearrangement Identifier☆451Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago
- ☆41Jun 8, 2023Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- ☆14Feb 22, 2022Updated 4 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jan 31, 2026Updated last month
- Long read based human genomic structural variation detection with cuteSV☆277Sep 30, 2025Updated 5 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆394Sep 13, 2023Updated 2 years ago
- ☆21Sep 12, 2019Updated 6 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆119Jul 22, 2025Updated 7 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆890Mar 2, 2026Updated last week
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- ☆16Apr 3, 2023Updated 2 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- ☆13May 27, 2025Updated 9 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Aug 28, 2025Updated 6 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆450Oct 20, 2025Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago