Alternatives and similar repositories for SV

Users that are interested in SV are comparing it to the libraries listed below

• caasivfbioinfo / Bol_pangenome
  ☆15Updated last year
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• yexinhai / genomics-analysis-pipeline
  Some useful bioinformatics pipelines for genomics analysis
  ☆14Updated 4 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• zlguu / Rice_Heterosis
  ☆15Updated last year
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 6 years ago
• baduelp / public
  ☆16Updated 8 months ago
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆9Updated last year
• comery / gVisualization
  issues for semina "Data Visulization"
  ☆13Updated last week
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆39Updated 4 years ago
• yilinZhang-bio / Watermelon-pangenome
  ☆22Updated last year
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆17Updated last week
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆17Updated 6 years ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 3 months ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆20Updated last year
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• wangzihell / IntroBlocker
  The IntroBlocker ancestry inference algorithm
  ☆11Updated last year
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 8 months ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆16Updated 3 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 5 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• tangerzhang / calc_switchErr
  ☆27Updated 2 months ago
• caixu0518 / ITIPs
  Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data
  ☆13Updated 3 years ago
• xuechantian / Plant-LncRNA-pipline
  ☆13Updated 3 months ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated 2 weeks ago