Alternatives and similar repositories for SV:

Users that are interested in SV are comparing it to the libraries listed below

• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• caasivfbioinfo / Bol_pangenome
  ☆14Updated last year
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆19Updated last year
• yilinZhang-bio / Watermelon-pangenome
  ☆20Updated last year
• yexinhai / genomics-analysis-pipeline
  Some useful bioinformatics pipelines for genomics analysis
  ☆14Updated 3 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆15Updated 10 months ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 5 years ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 3 years ago
• baduelp / public
  ☆16Updated 3 months ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 5 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆21Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• wangzihell / IntroBlocker
  The IntroBlocker ancestry inference algorithm
  ☆10Updated last year
• ZhangRenL / geneHapR
  ☆11Updated 4 months ago
• comery / Data-Visulization
  issues for semina "Data Visulization"
  ☆12Updated last year
• zlguu / Rice_Heterosis
  ☆14Updated last year
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 2 months ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆15Updated 3 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆16Updated 5 years ago
• caixu0518 / ITIPs
  Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data
  ☆13Updated 2 years ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 6 years ago
• tangerzhang / calc_switchErr
  ☆25Updated 3 years ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆17Updated 7 months ago
• YaoZhou89 / WGSc
  ☆16Updated 3 years ago
• ComparativeGenomicsToolkit / neutral-model-estimator
  Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
  ☆11Updated 5 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆37Updated last year
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆29Updated last year