JinfengChen / ScriptsLinks
☆75Updated 5 years ago
Alternatives and similar repositories for Scripts
Users that are interested in Scripts are comparing it to the libraries listed below
Sorting:
- Genomic related tools☆73Updated 4 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- Genome Scripts used in fungal comparative genomics☆66Updated 5 years ago
- ☆71Updated 5 years ago
- DNA序列比对结果 可视化展示工具☆57Updated 3 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated 2 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- ☆61Updated last year
- NLR-Annotator upload☆75Updated 2 years ago
- ☆84Updated last year
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆100Updated 4 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆108Updated last month
- Genome annotation pipeline☆65Updated last year
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 7 years ago
- ☆77Updated 6 years ago
- QTL-seq pipeline to identify causative mutations responsible for a phenotype☆59Updated 10 months ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Neural network classification of TE☆97Updated 2 months ago
- Useful bioinformatic scripts☆58Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 11 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- tomato graph pangenome☆85Updated 3 years ago
- Application of pan-genome for population☆116Updated 2 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆51Updated 4 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Updated last year
- Workflow for Building Microsynteny Networks☆58Updated 3 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated last year