shangshanzhizhe / Work_flow_of_population_geneticsLinks
整理常用的群体遗传学分析流程和脚本
☆112Updated last year
Alternatives and similar repositories for Work_flow_of_population_genetics
Users that are interested in Work_flow_of_population_genetics are comparing it to the libraries listed below
Sorting:
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆94Updated 8 months ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆141Updated 7 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆105Updated 2 weeks ago
- ☆81Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆98Updated 3 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆97Updated 2 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆193Updated 11 months ago
- MutMap pipeline to identify causative mutations responsible for a phenotype☆54Updated 6 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 9 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆156Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆207Updated last year
- Genomic related tools☆71Updated 3 years ago
- Any Way to Show Multi genomic Synteny☆201Updated last month
- NLR-Annotator upload☆69Updated 2 years ago
- Version 5 of the CAFE phylogenetics software☆136Updated 5 months ago
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆189Updated last month
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆225Updated last month
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆51Updated 5 years ago
- Scripts for analysis used during the course☆93Updated last year
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆82Updated 6 months ago
- A library for running k-mers based GWAS☆112Updated 9 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆175Updated 3 months ago
- Toolkits Integrated for Genetic and Evolutionary Research☆17Updated 2 months ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- DNA序列比对结果 可视化展示工具☆52Updated 2 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆56Updated last year