shangshanzhizhe / Work_flow_of_population_geneticsLinks
整理常用的群体遗传学分析流程和脚本
☆119Updated this week
Alternatives and similar repositories for Work_flow_of_population_genetics
Users that are interested in Work_flow_of_population_genetics are comparing it to the libraries listed below
Sorting:
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆109Updated last week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆201Updated last year
- MutMap pipeline to identify causative mutations responsible for a phenotype☆64Updated 11 months ago
- ☆86Updated last year
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆102Updated 4 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆116Updated 5 months ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆155Updated 2 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆168Updated 9 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- NLR-Annotator upload☆76Updated 2 years ago
- SMC++ infers population history from whole-genome sequence data.☆171Updated 2 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆66Updated 2 months ago
- Any Way to Show Multi genomic Synteny☆217Updated 6 months ago
- Genomic related tools☆75Updated 4 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated 2 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆198Updated 6 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆246Updated 2 weeks ago
- Scripts for analysis used during the course☆93Updated last year
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago
- A library for running k-mers based GWAS☆124Updated last year
- Version 5 of the CAFE phylogenetics software☆158Updated 11 months ago
- Genome annotation pipeline☆65Updated last year
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆181Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 6 months ago
- Toolkits Integrated for Genetic and Evolutionary Research☆18Updated 3 months ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆80Updated 6 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆202Updated last month
- Yet another Hi-C scaffolding tool☆169Updated last year