shangshanzhizhe / Work_flow_of_population_geneticsLinks
整理常用的群体遗传学分析流程和脚本
☆112Updated last year
Alternatives and similar repositories for Work_flow_of_population_genetics
Users that are interested in Work_flow_of_population_genetics are comparing it to the libraries listed below
Sorting:
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆95Updated this week
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆146Updated 8 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆196Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆107Updated last month
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆97Updated 3 weeks ago
- Code to compute the XP-CLR statistic to infer natural selection☆98Updated 3 years ago
- MutMap pipeline to identify causative mutations responsible for a phenotype☆54Updated 7 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated 11 months ago
- ☆82Updated last year
- Any Way to Show Multi genomic Synteny☆201Updated 2 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆157Updated 5 months ago
- SMC++ infers population history from whole-genome sequence data.☆167Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆228Updated 3 weeks ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆177Updated 4 months ago
- Scripts for analysis used during the course☆92Updated last year
- NLR-Annotator upload☆71Updated 2 years ago
- Genomic related tools☆70Updated 3 years ago
- Toolkits Integrated for Genetic and Evolutionary Research☆18Updated this week
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆207Updated 2 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆173Updated 2 years ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆80Updated 2 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- A library for running k-mers based GWAS☆115Updated 10 months ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆187Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆147Updated 7 months ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆58Updated last year