dbrg77 / plate_scATAC-seqLinks
A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
☆43Updated 4 years ago
Alternatives and similar repositories for plate_scATAC-seq
Users that are interested in plate_scATAC-seq are comparing it to the libraries listed below
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆17Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆34Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 8 months ago
- ☆34Updated 6 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆44Updated 4 years ago
- ☆20Updated 6 years ago
- ☆59Updated last year
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆55Updated 4 years ago
- ☆52Updated last year
- R package of colors for the Buenrostro Lab☆86Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago