Alternatives and similar repositories for plate_scATAC-seq

Users that are interested in plate_scATAC-seq are comparing it to the libraries listed below

• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆50Updated last year
• huangyh09 / brie
  BRIE: Bayesian Regression for Isoform Estimate in Single Cells
  ☆42Updated last year
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆43Updated 5 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated last year
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆54Updated 4 years ago
• satijalab / Integration2019
  ☆16Updated 6 years ago
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated 2 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆76Updated 4 months ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆52Updated 4 years ago
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆39Updated 2 years ago
• shendurelab / mouse-atac
  Repo for website and other code for mouse sci-ATAC-seq project
  ☆28Updated 4 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆78Updated 3 years ago
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆40Updated last year
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 2 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• wenweixiong / MARVEL
  ☆49Updated 11 months ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆74Updated 2 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated 10 months ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆35Updated last year
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆62Updated 2 years ago
• caleblareau / BuenColors
  R package of colors for the Buenrostro Lab
  ☆84Updated 10 months ago
• tinglab / reCAT
  ☆20Updated 6 years ago