XiaoTaoWang / NeoLoopFinderLinks
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
☆65Updated last year
Alternatives and similar repositories for NeoLoopFinder
Users that are interested in NeoLoopFinder are comparing it to the libraries listed below
Sorting:
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆68Updated 7 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 11 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆113Updated this week
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 7 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- Software for Quantifying Interspersed Repeat Expression☆58Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- An Optimized Nested TAD caller for Hi-C data☆22Updated 3 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- Micro-C QC and data analysis☆16Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆61Updated 10 months ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 2 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 11 months ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆60Updated 10 months ago
- ☆58Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago