XiaoTaoWang / NeoLoopFinderLinks
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
☆71Updated last year
Alternatives and similar repositories for NeoLoopFinder
Users that are interested in NeoLoopFinder are comparing it to the libraries listed below
Sorting:
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆74Updated last month
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 10 months ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆116Updated 3 weeks ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated 2 weeks ago
- A Python implementation for BH-FDR and HiCCUPS☆51Updated 4 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 3 years ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Software for Quantifying Interspersed Repeat Expression☆62Updated 3 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Docker for 4DN Hi-C processing pipeline☆61Updated 9 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆63Updated last year
- Quantification of transposable element expression using RNA-seq☆75Updated last year
- Estimate locus specific human LINE-1 expression.☆38Updated 2 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆61Updated last year
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆47Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- ☆58Updated last month
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 5 months ago
- 4C-seq processing pipeline☆24Updated 5 months ago
- Package for analysis and characterization of differential TADs☆25Updated 3 years ago