open2c / polychromLinks
Chromosome polymer simulations and in silico capture experiments
☆51Updated last month
Alternatives and similar repositories for polychrom
Users that are interested in polychrom are comparing it to the libraries listed below
Sorting:
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated 2 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last month
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆78Updated last year
- High-performance stochastic modeling of DNA loop extrusion interactions☆17Updated this week
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 4 months ago
- HLA-I ligand predictor☆42Updated 8 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 5 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆48Updated this week
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 9 months ago
- Immunoglobulin and T-Cell receptor rearrangement software☆49Updated last year
- ☆38Updated last year
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆57Updated last week
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Absolve antibody variable domain sequence analysis☆18Updated 6 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- ☆31Updated 7 months ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 10 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- Tool for deep mutational scanning experiments.☆54Updated 5 months ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆19Updated 2 weeks ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆46Updated this week
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated this week
- Absolute quantification package based on quantms.io☆15Updated 3 months ago