Alternatives and similar repositories for polychrom

Users that are interested in polychrom are comparing it to the libraries listed below

• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated 2 weeks ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆55Updated 3 months ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆82Updated last year
• betteridiot / seqlogo
  Python port of the R Bioconductor `seqLogo` package
  ☆35Updated this week
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆86Updated 4 months ago
• junioreif / OpenMiChroM
  ☆18Updated last month
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆51Updated 3 weeks ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆62Updated this week
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆56Updated 6 years ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆72Updated 2 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated last week
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆100Updated 10 months ago
• statbiophys / soNNia
  ☆16Updated 2 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 4 months ago
• paulsengroup / modle
  High-performance stochastic modeling of DNA loop extrusion interactions
  ☆18Updated last month
• JamieHeather / stitchr
  Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
  ☆64Updated 5 months ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆43Updated 6 months ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 7 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 4 months ago
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 9 months ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆19Updated 6 years ago
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated 2 years ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆20Updated 3 years ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆60Updated last year
• GreiffLab / immuneSIM
  ☆38Updated 2 years ago
• jmschrei / bpnet-lite
  This repository hosts a minimal version of a Python API for BPNet.
  ☆53Updated last week
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆79Updated 2 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆44Updated last week