open2c / polychromLinks
Chromosome polymer simulations and in silico capture experiments
☆51Updated last month
Alternatives and similar repositories for polychrom
Users that are interested in polychrom are comparing it to the libraries listed below
Sorting:
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆84Updated 3 weeks ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 5 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last week
- HLA-II ligand predictor.☆44Updated 2 years ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆11Updated last year
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated last year
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆78Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆67Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated this week
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 9 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 6 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆73Updated last week
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆41Updated 2 months ago
- Comprehensive Python client for the Uniprot REST API☆50Updated 3 months ago
- High-performance stochastic modeling of DNA loop extrusion interactions☆17Updated last week
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆32Updated 7 months ago
- Python port of the R Bioconductor `seqLogo` package☆35Updated last year
- HLA-I ligand predictor☆43Updated 9 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 4 months ago
- bioinformatics plotting and tools☆59Updated last year
- Draw RNA secondary structures in python.☆48Updated 2 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆49Updated 3 weeks ago
- ☆38Updated last year
- FREE Divergence Error-Correcting DNA Barcodes☆27Updated 7 months ago
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 11 months ago