broadinstitute / ABC-Enhancer-Gene-Prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
☆199Updated 2 weeks ago
Related projects: ⓘ
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆170Updated 2 months ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆188Updated 2 months ago
- TCR and BCR assembly from RNA-seq data☆270Updated last month
- Single-cell Transcriptome and Regulome Analysis Pipeline☆274Updated last year
- Application for making ENCODE Blacklists☆261Updated 3 years ago
- my notes for scATACseq analysis☆114Updated 4 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆115Updated 2 years ago
- R package to access DoRothEA's regulons☆132Updated 6 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆273Updated 2 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆301Updated last year
- T/B cell receptor sequencing analysis notes☆202Updated last month
- A tool for detecting somatic variants in single cell data☆152Updated this week
- Bench-marking classification tools for scRNA-seq data☆181Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆99Updated last year
- ☆76Updated 2 months ago
- Benchmarking computational single cell ATAC-seq methods☆176Updated 3 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆153Updated 7 months ago
- chromatin Variability Across Regions (of the genome!)☆153Updated 2 months ago
- Tools for single-cell data processing☆117Updated 3 months ago
- Introduction to bulk RNA-seq☆89Updated 2 weeks ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆201Updated 4 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆202Updated 3 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆185Updated last year
- Clustering scRNAseq by genotypes☆160Updated 3 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆254Updated last year
- ATAC-seq peak-calling and QC analysis pipeline☆179Updated 2 months ago
- ☆118Updated 5 years ago
- Cell types enrichment analysis☆180Updated 3 months ago
- scATAC-seq data analysis tools and papers☆91Updated 11 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆112Updated 3 weeks ago