broadinstitute / ABC-Enhancer-Gene-PredictionLinks
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
☆246Updated 6 months ago
Alternatives and similar repositories for ABC-Enhancer-Gene-Prediction
Users that are interested in ABC-Enhancer-Gene-Prediction are comparing it to the libraries listed below
Sorting:
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Updated last month
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆201Updated 3 weeks ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆299Updated 2 years ago
- ☆145Updated 7 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆201Updated 5 years ago
- A tool for detecting somatic variants in single cell data☆216Updated last year
- Benchmarking computational single cell ATAC-seq methods☆184Updated 5 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆287Updated last year
- Bench-marking classification tools for scRNA-seq data☆190Updated 3 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Cell types enrichment analysis☆206Updated last year
- Analysis pipeline for ATAC-seq data☆83Updated 2 years ago
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- Clustering scRNAseq by genotypes☆192Updated 2 months ago
- scATAC-seq data analysis tools and papers☆128Updated 6 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆201Updated 4 months ago
- my notes for scATACseq analysis☆133Updated last year
- Tools for single-cell data processing☆131Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- ☆102Updated 3 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆195Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆221Updated last month
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆235Updated last week
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆172Updated last week
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆182Updated last week
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆132Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆338Updated this week
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- Single-Cell Genotyping Tool☆215Updated 2 years ago