Alternatives and similar repositories for de_novo_scripts

Users that are interested in de_novo_scripts are comparing it to the libraries listed below

• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆24Updated 10 months ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated 9 months ago
• kundajelab / ataqc
  ☆17Updated 6 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• hellbelly / BS-Snper
  ☆38Updated 4 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• ChrisMaherLab / ClonEvol
  ☆13Updated 8 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆68Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆16Updated 3 years ago
• nghiavtr / FuSeq_WES
  ☆12Updated 2 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• plantformatics / Socrates
  ☆21Updated 6 months ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆24Updated 4 years ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆31Updated 2 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• scoutzxb / CscoreTool
  ☆21Updated 5 years ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 9 months ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆32Updated 9 months ago
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• fhormoz / caviar
  ☆62Updated 3 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆32Updated 2 years ago
• WansonChoi / CookHLA
  An accurate and efficient HLA imputation method.
  ☆26Updated 2 years ago
• CSOgroup / CALDER
  ☆22Updated 2 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆17Updated 4 years ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆32Updated 3 years ago