ksamocha / de_novo_scriptsLinks
Script used to identify de novo variants from sequencing data.
☆12Updated 8 years ago
Alternatives and similar repositories for de_novo_scripts
Users that are interested in de_novo_scripts are comparing it to the libraries listed below
Sorting:
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- ☆23Updated last year
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 2 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 11 months ago
- Burden testing against public controls☆50Updated last year
- ☆13Updated 7 years ago
- ☆23Updated 4 years ago
- ☆22Updated 6 months ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 7 months ago
- Rocking R at UMCCR☆9Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ☆17Updated 6 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆25Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Enhanced version of the FastQTL QTL mapper☆66Updated 2 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- ☆26Updated 3 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ☆40Updated 7 years ago
- ☆37Updated 5 years ago