Script used to identify de novo variants from sequencing data.
☆11Mar 2, 2017Updated 9 years ago
Alternatives and similar repositories for de_novo_scripts
Users that are interested in de_novo_scripts are comparing it to the libraries listed below
Sorting:
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆35Mar 2, 2021Updated 5 years ago
- ☆11Apr 4, 2023Updated 2 years ago
- ☆22Feb 25, 2026Updated last week
- Fork of ricopili for development of pipeline for family-based data☆19Jun 22, 2025Updated 8 months ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Aug 13, 2025Updated 6 months ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- ☆25Apr 29, 2018Updated 7 years ago
- Repo for downloading and storing OMIM data☆19Oct 6, 2016Updated 9 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20May 11, 2018Updated 7 years ago
- Frequently used commands in Bioinformatics☆23Feb 9, 2026Updated 3 weeks ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Dec 11, 2025Updated 2 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- ☆30Jul 15, 2021Updated 4 years ago
- ☆27Sep 2, 2021Updated 4 years ago
- Calling deletions using deep convolutional neural☆24Feb 12, 2020Updated 6 years ago
- ☆37Aug 14, 2019Updated 6 years ago
- ☆39Apr 15, 2021Updated 4 years ago
- RcisTarget: Transcription factor binding motif enrichment☆47Mar 4, 2024Updated 2 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Oct 2, 2019Updated 6 years ago
- GRUD is a genotype imputation based on deep learning algorithms☆12Jul 3, 2024Updated last year
- Services and guidelines for normalizing drug and other therapy terms☆13Feb 26, 2026Updated last week
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 2 years ago
- R package wrapping bedtools☆44Mar 19, 2025Updated 11 months ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Jan 19, 2023Updated 3 years ago
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆41Mar 18, 2022Updated 3 years ago
- ☆50Jul 9, 2025Updated 7 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- ☆13Apr 23, 2025Updated 10 months ago
- ☆11Jul 13, 2018Updated 7 years ago