weir12 / DENALinks
Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
☆22Updated 3 years ago
Alternatives and similar repositories for DENA
Users that are interested in DENA are comparing it to the libraries listed below
Sorting:
- ☆23Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆33Updated last month
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 2 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- ☆14Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆55Updated 8 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆22Updated 11 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆33Updated 3 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- ☆63Updated 2 months ago
- New version of JACUSA -> 2.0☆29Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Pore-C support☆53Updated 2 years ago
- ☆37Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated 2 months ago