weir12 / DENALinks
Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
☆22Updated 2 years ago
Alternatives and similar repositories for DENA
Users that are interested in DENA are comparing it to the libraries listed below
Sorting:
- ☆23Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆17Updated last month
- ☆14Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated this week
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆22Updated 10 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆53Updated 7 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- ☆30Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Updated last week
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- ☆76Updated 9 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆62Updated last year
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 10 months ago
- New version of JACUSA -> 2.0☆29Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- Yet another nanopore modification comparison tool☆12Updated 3 years ago
- ☆63Updated 3 weeks ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆32Updated last month