weir12 / DENALinks
Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
☆22Updated 3 years ago
Alternatives and similar repositories for DENA
Users that are interested in DENA are comparing it to the libraries listed below
Sorting:
- ☆24Updated 3 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 4 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Updated last month
- ☆14Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆22Updated last year
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆60Updated 10 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- ENCODE long read RNA-seq pipeline☆52Updated 3 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 5 months ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆64Updated last week
- ☆30Updated 4 years ago
- ☆34Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- ☆83Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago