weir12 / DENA
Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
☆22Updated 2 years ago
Alternatives and similar repositories for DENA:
Users that are interested in DENA are comparing it to the libraries listed below
- ☆23Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 8 months ago
- ☆14Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 weeks ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 6 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 11 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆49Updated last month
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 4 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆33Updated last year
- Set of tools to manipulate and visualize modified base bam files☆53Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- ☆17Updated 2 weeks ago
- Xron - an omni basecaller for ONT reads.☆21Updated 4 months ago
- jupyter notebooks for Parker et al. eLife 2019☆8Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 11 months ago
- ☆29Updated 4 years ago