weir12 / DENALinks
Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
☆22Updated 2 years ago
Alternatives and similar repositories for DENA
Users that are interested in DENA are comparing it to the libraries listed below
Sorting:
- ☆23Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆17Updated 2 weeks ago
- ☆14Updated last year
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated 2 months ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆53Updated 6 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆61Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Pore-C support☆53Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- Xron - an omni basecaller for ONT reads.☆22Updated 9 months ago
- ☆49Updated last year
- ☆63Updated last year
- Detecting genome structural variants with deep learning in single molecule sequencing☆113Updated 5 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago
- Somatic structural variant caller for long-read data☆80Updated 3 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 10 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆116Updated 2 months ago