Analysing Capture Seq Count Data
☆13Jun 11, 2018Updated 7 years ago
Alternatives and similar repositories for atacr
Users that are interested in atacr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ATAC_seq Workshop☆13Feb 16, 2018Updated 8 years ago
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Jul 9, 2019Updated 6 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Nov 9, 2022Updated 3 years ago
- Quickly transform data.frames into onehot encoded matrices☆11Apr 11, 2019Updated 6 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Jul 24, 2017Updated 8 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- call copy number from WES(WXS)☆11May 10, 2021Updated 4 years ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- Package to wrangle and visualize genomic data in R☆26Feb 10, 2026Updated last month
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Jun 9, 2021Updated 4 years ago
- DiffNetFDR☆10Sep 12, 2018Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- Interactive package for Short AsyNchronous Time-series Analysis (SANTA) in R, implemented in Shiny☆11Mar 6, 2024Updated 2 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 6 years ago
- All-in-one analysis pipeline☆40Sep 3, 2024Updated last year
- ☆11Apr 4, 2023Updated 2 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- An R package for testing high-dimensional covariance matrices☆11Oct 5, 2017Updated 8 years ago
- ☆28Jan 28, 2020Updated 6 years ago
- Super learning of conditional survival functions with right-censored time-to-event outcomes in discrete or continuous time.☆15Dec 9, 2024Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- Older repo for MRLocus. See new website for software usage guide:☆15Aug 17, 2023Updated 2 years ago
- A small app that runs like 20 Questions but for Pokémon☆13Mar 8, 2019Updated 7 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 4 years ago
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 7 years ago
- Helper functions for UK Biobank data☆12Dec 6, 2021Updated 4 years ago
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 3 years ago
- Gene-level general linear mixed model☆24Oct 1, 2025Updated 5 months ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Feb 27, 2020Updated 6 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Apr 3, 2025Updated 11 months ago
- ☆14Aug 31, 2016Updated 9 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 5 years ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- Molecular analysis of pre-invasive lung cancer samples☆14Jan 18, 2019Updated 7 years ago