SchulzLab / STARELinks
TF analysis from epigenetic and Hi-C data
☆19Updated 10 months ago
Alternatives and similar repositories for STARE
Users that are interested in STARE are comparing it to the libraries listed below
Sorting:
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Mean Alterations Using Discrete Expression☆14Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 4 months ago
- scover☆24Updated 2 years ago
- ☆54Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- ☆19Updated 2 years ago
- ☆20Updated 2 years ago
- ☆23Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Toolkit for single-cell copy number analysis☆29Updated last month
- ☆18Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated last month
- binned motif enrichment analysis and visualisation☆45Updated 2 weeks ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 4 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago