chriscainx / gastric-cancerLinks
☆15Updated 2 years ago
Alternatives and similar repositories for gastric-cancer
Users that are interested in gastric-cancer are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆24Updated 3 years ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 7 months ago
- Code used to process the data of the HBCA project☆32Updated last year
- ☆22Updated 2 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 11 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆15Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- ☆13Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- ☆37Updated 3 years ago
- ☆21Updated 11 months ago
- ☆12Updated last year
- Computational pipeline to process EasySci-RNA data.☆22Updated last year
- ☆18Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆32Updated 4 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆35Updated 5 months ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated 2 years ago
- ☆17Updated 2 years ago
- R package IReNA☆28Updated last year
- BulkSignalR☆24Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆17Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Updated 2 years ago
- Identify cell type based on cell markers for single cell squencing☆11Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago