dozmorovlab / HiCcompare
Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices
☆19Updated last year
Related projects ⓘ
Alternatives and complementary repositories for HiCcompare
- A toolkit for analyzing architectural stripes☆19Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- ☆20Updated 4 years ago
- QC report generator for Hi-C pairs file☆10Updated 4 years ago
- Chromatin domains bursting with flavor☆12Updated 4 years ago
- ☆23Updated 3 years ago
- ☆23Updated 2 months ago
- GENome Organisation Visual Analytics☆13Updated 2 years ago
- ☆18Updated 3 months ago
- ☆19Updated last year
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆12Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆16Updated 11 months ago
- End-guided RNA assembler☆15Updated this week
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆15Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 8 months ago
- ☆15Updated 7 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆18Updated 2 months ago
- iread☆23Updated 3 years ago
- Red-C data processing☆13Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- ☆12Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago