dozmorovlab / HiCcompareLinks
Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the analysis of multiple Hi-C matrices
☆23Updated 2 years ago
Alternatives and similar repositories for HiCcompare
Users that are interested in HiCcompare are comparing it to the libraries listed below
Sorting:
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- A toolkit for analyzing architectural stripes☆20Updated 10 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆22Updated 2 years ago
- ☆21Updated 5 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- QC report generator for Hi-C pairs file☆12Updated 5 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆19Updated 2 years ago
- ☆37Updated 6 years ago
- ☆19Updated 2 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- ☆20Updated 3 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆23Updated 4 years ago
- ☆32Updated 9 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 10 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- ☆15Updated 2 years ago
- ☆17Updated last year
- ☆13Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Updated 4 years ago
- ☆23Updated 9 months ago
- ☆22Updated 2 months ago