GoekeLab / proActivLinks
Estimation of Promoter Activity from RNA-Seq data
☆56Updated 6 months ago
Alternatives and similar repositories for proActiv
Users that are interested in proActiv are comparing it to the libraries listed below
Sorting:
- Links to ATAC-seq analysis tools☆77Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- Tutorial Website☆63Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated last month
- A list of alternative splicing analysis resources☆47Updated 10 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆87Updated last year
- ☆75Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- ☆60Updated 6 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- mgatk: mitochondrial genome analysis toolkit☆110Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 weeks ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆75Updated 3 months ago
- RNA editing tests☆17Updated 5 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆77Updated this week
- Clustering motif models to remove redundancy☆43Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago