Allele-specific modeling of diploid Hi-C data
☆12May 6, 2021Updated 4 years ago
Alternatives and similar repositories for ASHIC
Users that are interested in ASHIC are comparing it to the libraries listed below
Sorting:
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Genomics 3D Visualizer☆14Jun 14, 2024Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated last week
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆17Mar 13, 2026Updated last week
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Oct 21, 2023Updated 2 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- ☆26Jan 26, 2026Updated last month
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated 9 months ago
- Strand and WGD aware syntenic gene identification☆15Oct 16, 2025Updated 5 months ago
- ☆11Apr 4, 2023Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Apr 25, 2024Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- gghic makes visualization of Hi-C/-like data easily in R☆25Jan 23, 2026Updated last month
- ☆71Nov 21, 2025Updated 4 months ago
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- base-level dotplots from PAF alignments☆32Sep 18, 2025Updated 6 months ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 6 months ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆25Feb 9, 2026Updated last month
- ☆36Jan 14, 2024Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- A Tool for low Coverage HiFi Data Assembly☆38Dec 27, 2025Updated 2 months ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Jan 29, 2024Updated 2 years ago
- Allele-specific alignment sorting☆61Jan 7, 2023Updated 3 years ago
- ☆14May 2, 2021Updated 4 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Aug 28, 2025Updated 6 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 5 months ago
- ☆13Jul 6, 2018Updated 7 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Jan 8, 2026Updated 2 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 3 months ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated last week
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Dec 16, 2022Updated 3 years ago
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- ☆38Oct 23, 2025Updated 4 months ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 7 months ago