angieyen / ChromDiffLinks
ChromDiff program as described in Yen and Kellis, Nature Communications 2015.
☆13Updated 9 years ago
Alternatives and similar repositories for ChromDiff
Users that are interested in ChromDiff are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆28Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆14Updated last year
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆20Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- ☆34Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 9 months ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Updated 7 years ago
- ☆20Updated 11 months ago
- Differential Expression with Capture Efficiency adjustmeNT☆14Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago