miRTrace
☆11Jun 14, 2023Updated 2 years ago
Alternatives and similar repositories for mirtrace
Users that are interested in mirtrace are comparing it to the libraries listed below
Sorting:
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆19Apr 24, 2025Updated 10 months ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 3 years ago
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆16Jan 16, 2023Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- Estimate microRNA activity in single cells☆13May 4, 2022Updated 3 years ago
- GFF3 format with miRNA and isomiR information from sequencing data☆16Aug 5, 2019Updated 6 years ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- ☆20Apr 7, 2025Updated 11 months ago
- Pipeline for lncRNA, Circular RNA, and novel mRNA identification.☆11May 5, 2023Updated 2 years ago
- High-Performance Computing in Bioinformatics☆22May 16, 2022Updated 3 years ago
- Killer tools/packages/libraries/websits/...☆21Mar 9, 2026Updated last week
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 4 months ago
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 5 months ago
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 9 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- 🐇 Typescript-first LLM framework with static type inference, testability, and composability.☆19Dec 1, 2024Updated last year
- MeSH Enrichment and Semantic analyses☆12Dec 23, 2025Updated 2 months ago
- ☆95Jul 6, 2025Updated 8 months ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Oct 4, 2025Updated 5 months ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16May 23, 2023Updated 2 years ago
- DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring ve…☆43Feb 9, 2022Updated 4 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- A single-cell RNA-seq data generative model☆18Jan 11, 2025Updated last year
- ☆23May 16, 2020Updated 5 years ago
- ☆10Jan 29, 2020Updated 6 years ago
- Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker☆12Nov 11, 2016Updated 9 years ago
- Pipeline for the analysis of PE ChIP-seq data☆15Jul 20, 2020Updated 5 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- Create equal-area histograms with 'ggplot2'☆10Jul 23, 2023Updated 2 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Jan 19, 2026Updated 2 months ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆14Mar 9, 2026Updated last week
- MirMachine, a command line tool to detect microRNA homologs in genome sequences.☆13Mar 5, 2026Updated 2 weeks ago
- ☆29Sep 28, 2021Updated 4 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆20Dec 4, 2018Updated 7 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated last month
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Jul 9, 2024Updated last year
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago