Alternatives and similar repositories for mirtrace

Users that are interested in mirtrace are comparing it to the libraries listed below

• neurogenomics / orthogene
  🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…
  ☆46Updated last month
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• sinanugur / cellsnake
  Cellsnake tool main repo
  ☆35Updated last year
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆33Updated last year
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆29Updated 4 years ago
• mbassalbioinformatics / ChIP-AP
  An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
  ☆22Updated last year
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• zanglab / SICER2
  ☆23Updated 8 months ago
• hbctraining / Intro-to-peak-analysis
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
  ☆38Updated 2 months ago
• Wedge-lab / dpclust
  Dirichlet Process based methods for subclonal reconstruction of tumours
  ☆30Updated 8 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 5 months ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆50Updated last month
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆41Updated last year
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆61Updated 2 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆40Updated 3 years ago
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• Core-Bioinformatics / bulkAnalyseR
  ☆29Updated 2 years ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆36Updated 3 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last year
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 3 years ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆46Updated last year
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆24Updated 3 months ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆36Updated last month
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆22Updated last year
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year