buenrostrolab / stimATAC_analyses_codeLinks
All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
☆41Updated 2 years ago
Alternatives and similar repositories for stimATAC_analyses_code
Users that are interested in stimATAC_analyses_code are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Functional Inference of Gene Regulation☆51Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 5 months ago
- scWGCNA☆61Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Gene group activity utility functions for Scanpy☆100Updated last year
- ☆50Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- ☆62Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated last week
- ☆53Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆35Updated 3 weeks ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Updated 9 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆41Updated 4 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Updated last year
- ☆63Updated 2 years ago
- ☆33Updated last year
- Single cell omics biology annotations☆53Updated 9 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year