linlabbcm / rose2
☆13Updated 5 years ago
Alternatives and similar repositories for rose2:
Users that are interested in rose2 are comparing it to the libraries listed below
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 7 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆32Updated 3 years ago
- ☆49Updated 8 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- ☆33Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 8 months ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 5 months ago
- Example scripts for analyzing CUT&RUN datasets☆13Updated 6 years ago
- ☆30Updated 3 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Peak caller for CUT&TAG data☆26Updated 2 years ago
- ☆19Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- ☆18Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago