linlabbcm / rose2Links
☆13Updated 5 years ago
Alternatives and similar repositories for rose2
Users that are interested in rose2 are comparing it to the libraries listed below
Sorting:
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 8 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆32Updated 3 years ago
- ☆20Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- ☆49Updated 10 months ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- ☆17Updated 6 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 10 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆34Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year