wwood / kingfisher-downloadLinks
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
☆288Updated 5 months ago
Alternatives and similar repositories for kingfisher-download
Users that are interested in kingfisher-download are comparing it to the libraries listed below
Sorting:
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆230Updated 6 months ago
- parallel fastq-dump wrapper☆302Updated 2 years ago
- Download FASTQ files from SRA or ENA repositories.☆363Updated 2 weeks ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆244Updated 4 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated last week
- ☆286Updated 3 months ago
- Full-Length Alternative Isoform analysis of RNA☆245Updated 2 weeks ago
- Read trimming tool for Illumina NGS data.☆150Updated 10 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆275Updated 2 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Updated 2 years ago
- Genome browser and variant annotation☆387Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated last month
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆232Updated 2 months ago
- TransDecoder source☆301Updated 3 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆258Updated 4 months ago
- Web application to explore the Sequence Read Archive.☆218Updated 6 months ago
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated 11 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆254Updated 6 months ago
- ☆284Updated 3 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆186Updated last week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆185Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆292Updated 2 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆283Updated 5 months ago
- RNA-seq workflow using STAR and DESeq2☆351Updated last month
- Tool for plotting sequencing data along genomic coordinates.☆335Updated last month