wwood / kingfisher-download
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
☆258Updated this week
Alternatives and similar repositories for kingfisher-download:
Users that are interested in kingfisher-download are comparing it to the libraries listed below
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆213Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆209Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆224Updated 4 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆265Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆244Updated last month
- This Snakemake pipeline implements the GATK best-practices workflow☆250Updated last year
- A collection of scripts and notes related to genomics and bioinformatics☆207Updated last month
- parallel fastq-dump wrapper☆288Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆213Updated 8 months ago
- Web application to explore the Sequence Read Archive.☆215Updated last week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆145Updated 7 months ago
- Full-Length Alternative Isoform analysis of RNA☆222Updated this week
- Genome Assembly and Annotation Service code☆210Updated last year
- Pipeline to fetch metadata and raw FastQ files from public databases☆173Updated last week
- Download FASTQ files from SRA or ENA repositories.☆310Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆144Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆246Updated 2 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- SUPPA: Fast quantification of splicing and differential splicing☆272Updated 9 months ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated 2 weeks ago
- Detecting sites of genomic enrichment☆189Updated last year
- TransDecoder source☆287Updated 5 months ago
- Read trimming tool for Illumina NGS data.☆131Updated 10 years ago
- RNA-seq workflow using STAR and DESeq2☆339Updated 7 months ago
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆160Updated last year