wwood / kingfisher-downloadLinks
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
☆273Updated last month
Alternatives and similar repositories for kingfisher-download
Users that are interested in kingfisher-download are comparing it to the libraries listed below
Sorting:
- parallel fastq-dump wrapper☆298Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆235Updated 4 years ago
- Full-Length Alternative Isoform analysis of RNA☆230Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆231Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated last week
- Download FASTQ files from SRA or ENA repositories.☆338Updated 3 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆254Updated 5 months ago
- Web application to explore the Sequence Read Archive.☆218Updated 3 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆139Updated 10 years ago
- Tool for plotting sequencing data along genomic coordinates.☆296Updated 2 weeks ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆212Updated 2 weeks ago
- ☆263Updated 7 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆203Updated 11 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆206Updated last week
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆335Updated 3 weeks ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆369Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆244Updated 3 months ago
- Genome browser and variant annotation☆362Updated 2 weeks ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆251Updated 3 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆265Updated 2 weeks ago
- Metagenome analysis pipeline☆98Updated 3 years ago
- ☆256Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆151Updated 10 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆422Updated 6 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆177Updated last week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆269Updated 5 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆234Updated 2 months ago
- Pathogen NGS Documentary☆144Updated last year