DessimozLab / read2treeLinks
a tool for inferring species tree from sequencing reads
☆156Updated last month
Alternatives and similar repositories for read2tree
Users that are interested in read2tree are comparing it to the libraries listed below
Sorting:
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 11 months ago
- Constructing a pangenome gene graph☆203Updated 5 months ago
- List of genome assembly tools☆90Updated 2 weeks ago
- source code for EVM☆121Updated last year
- Research release basecalling models and configurations☆117Updated 7 months ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- A program for detection of tRNA genes☆81Updated 3 years ago
- Variant calling tool for long-read sequencing data☆116Updated 9 months ago
- Visualise and analyse nanopore (ONT) raw signals☆126Updated last month
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆179Updated last month
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Metagenomic classification of long-read sequencing data☆97Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆118Updated last month
- Bioinformatics tool for Locus Visualisation☆157Updated 2 months ago
- Development version of Easyfig☆103Updated 2 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆109Updated 7 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- A list of software for pangenomics☆165Updated last week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 4 months ago
- Python programs for processing GFF3 files☆102Updated last month
- Aligns short reads using dynamic seed size with strobemers☆189Updated last month
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆111Updated 6 months ago
- Best practices and workflow for genome annotation☆79Updated 9 months ago
- accurate LiftOver tool for new genome assemblies☆146Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated 2 weeks ago
- A fast whole-genome aligner based on de Bruijn graphs☆156Updated 6 months ago
- Workflow for Building Microsynteny Networks☆59Updated 3 years ago
- Tiberius is a deep learning gene finder.☆90Updated last week