DessimozLab / read2treeLinks
a tool for inferring species tree from sequencing reads
☆150Updated 2 weeks ago
Alternatives and similar repositories for read2tree
Users that are interested in read2tree are comparing it to the libraries listed below
Sorting:
- Constructing a pangenome gene graph☆195Updated 2 weeks ago
- List of genome assembly tools☆72Updated 3 weeks ago
- Dfam Transposable Element Tools Docker container.☆100Updated last week
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Updated 7 months ago
- source code for EVM☆116Updated 9 months ago
- Visualise and analyse nanopore (ONT) raw signals☆120Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- Research release basecalling models and configurations☆115Updated 3 months ago
- Workflow for Building Microsynteny Networks☆56Updated 3 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆153Updated last month
- Variant calling tool for long-read sequencing data☆112Updated 5 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated 3 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆106Updated 2 months ago
- Python programs for processing GFF3 files☆99Updated last year
- Pairwise whole genome aligner☆183Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆22Updated 3 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 2 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- Version 5 of the CAFE phylogenetics software☆142Updated 6 months ago
- Metagenomic classification of long-read sequencing data☆93Updated last week
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- A package for designing compact and comprehensive capture probe sets.☆89Updated last year
- NLR annotation tool☆32Updated last year
- Aligns short reads using dynamic seed size with strobemers☆175Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month