a tool for inferring species tree from sequencing reads
☆161May 12, 2026Updated last week
Alternatives and similar repositories for read2tree
Users that are interested in read2tree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆98Updated this week
- Synteny and Rearrangement Identifier☆467Mar 17, 2026Updated 2 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 11 months ago
- Tool to plot synteny and structural rearrangements between genomes☆346Apr 7, 2025Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆239Sep 6, 2024Updated last year
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Sep 5, 2025Updated 8 months ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- Differential k-mer analysis☆41Jan 29, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 27, 2026Updated 3 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆216Mar 20, 2026Updated 2 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆250Updated this week
- Align proteins to genomes with splicing and frameshift☆402Jan 5, 2026Updated 4 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36Apr 28, 2026Updated 3 weeks ago
- ☆62Sep 15, 2025Updated 8 months ago
- BWT construction and search☆127Jan 14, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated last month
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 8 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆563Feb 14, 2024Updated 2 years ago
- Using Deep Learning to predict gene annotations☆288May 4, 2026Updated 2 weeks ago
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 9 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 2 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- Extensive de-novo TE Annotator☆446May 12, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Find, circularise and annotate mitogenome from PacBio assemblies☆196May 11, 2025Updated last year
- ☆120Oct 10, 2025Updated 7 months ago
- An updated pipeline for pangenome investigation☆358Updated this week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆212Aug 21, 2024Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆56Updated this week
- A genome visualization python package for comparative genomics☆403Updated this week
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Feb 26, 2026Updated 2 months ago