a tool for inferring species tree from sequencing reads
☆161May 19, 2026Updated 2 weeks ago
Alternatives and similar repositories for read2tree
Users that are interested in read2tree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genome completeness evaluation tool based on miniprot☆245Sep 18, 2025Updated 8 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆99May 15, 2026Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 2 weeks ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆207Nov 23, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 11 months ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆241Sep 6, 2024Updated last year
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated 3 weeks ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Sep 5, 2025Updated 9 months ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Differential k-mer analysis☆41Jan 29, 2024Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆107Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Graph-based assembly phasing☆95Nov 25, 2025Updated 6 months ago
- Align proteins to genomes with splicing and frameshift☆404Jan 5, 2026Updated 5 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆37Apr 28, 2026Updated last month
- ☆62Sep 15, 2025Updated 8 months ago
- BWT construction and search☆127Jan 14, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TSEBRA: Transcript Selector for BRAKER☆50Apr 7, 2026Updated 2 months ago
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 8 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆565Feb 14, 2024Updated 2 years ago
- Constructing a pangenome gene graph☆207Aug 11, 2025Updated 9 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 3 months ago
- Using Deep Learning to predict gene annotations☆290May 21, 2026Updated 2 weeks ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- Extensive de-novo TE Annotator☆448May 12, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- ☆121Updated this week
- An updated pipeline for pangenome investigation☆361Updated this week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆213Aug 21, 2024Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆59May 17, 2026Updated 3 weeks ago
- A genome visualization python package for comparative genomics☆406May 17, 2026Updated 3 weeks ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆93Feb 26, 2026Updated 3 months ago