pachterlab / ffqLinks
A tool to find sequencing data and metadata from public databases.
☆592Updated last year
Alternatives and similar repositories for ffq
Users that are interested in ffq are comparing it to the libraries listed below
Sorting:
- Bioinformatics one liners from Ming Tang☆500Updated 5 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated last week
- RNA-seq workflow using STAR and DESeq2☆351Updated last month
- 10x Genomics Single Cell Analysis☆440Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆535Updated 6 months ago
- Collections of library structure and sequence of popular single cell genomic methods☆489Updated 8 months ago
- ☆407Updated 4 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆862Updated last year
- Performant Pythonic GenomicRanges☆493Updated 2 weeks ago
- Application for making ENCODE Blacklists☆331Updated 4 years ago
- Download FASTQ files from SRA or ENA repositories.☆363Updated 2 weeks ago
- parallel fastq-dump wrapper☆302Updated 2 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆439Updated last month
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆451Updated last year
- Intro to ChIPseq using HPC☆321Updated 2 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆440Updated 5 months ago
- genes and genomes at your fingertips☆405Updated 3 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆536Updated 4 months ago
- Tool for plotting sequencing data along genomic coordinates.☆335Updated last month
- GTEx & TOPMed data production and analysis pipelines☆392Updated 4 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆533Updated this week
- Tools to process and analyze deep sequencing data.☆752Updated 6 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆457Updated last year
- A curated and summarized list of bioinformatics bench-marking papers and resources.☆352Updated 2 months ago
- ENCODE ATAC-seq pipeline☆444Updated last year
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆288Updated last year
- ☆212Updated 5 months ago
- ☆284Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆558Updated last year