A tool to find sequencing data and metadata from public databases.
☆605Aug 13, 2024Updated 2 years ago
Alternatives and similar repositories for ffq
Users that are interested in ffq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧬 gget enables efficient querying of genomic reference databases☆1,210Updated this week
- Download FASTQ files from SRA or ENA repositories.☆410Updated this week
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆367Aug 16, 2026Updated 2 months ago
- genes and genomes at your fingertips☆410Jun 9, 2026Updated 4 months ago
- A grammar of graphics for comparative genomics☆792Oct 5, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Command line scientific data management tool☆230Nov 4, 2024Updated last year
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆193Oct 8, 2026Updated 3 weeks ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆147Aug 24, 2025Updated last year
- Gene cluster comparison figure generator☆660Updated this week
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆395Oct 23, 2026Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆906Oct 3, 2026Updated 3 weeks ago
- parallel fastq-dump wrapper☆311Apr 26, 2023Updated 3 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆221Apr 24, 2026Updated 6 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,453Oct 7, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A list of interesting genome browser and genome visualization programs☆1,112Updated this week
- Genome browser and variant annotation☆400Updated this week
- seqfu - Sequece Fastx Utilities☆133Oct 13, 2026Updated 2 weeks ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆878May 2, 2026Updated 5 months ago
- Web application to explore the Sequence Read Archive.☆225Jul 17, 2025Updated last year
- machine-readable file format for genomic library sequence and structure☆130Updated this week
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆483Oct 21, 2026Updated last week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,605Updated this week
- Genomic interval operations on Pandas DataFrames☆196Oct 5, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Near-optimal RNA-Seq quantification☆775Jul 12, 2026Updated 3 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆438Sep 2, 2026Updated last month
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated last year
- Align proteins to genomes with splicing and frameshift☆425Jan 5, 2026Updated 9 months ago
- Performant Pythonic GenomicRanges☆492Updated this week
- A declarative interactive genomics visualization library for Python.☆242Nov 24, 2025Updated 11 months ago
- An efficient CLI to extract sequences from the SRA☆132Jun 12, 2026Updated 4 months ago
- Fast Gene Set Enrichment Analysis☆460Sep 22, 2026Updated last month
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Collections of library structure and sequence of popular single cell genomic methods☆514Apr 16, 2026Updated 6 months ago
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆559Updated this week
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆318Sep 2, 2026Updated last month
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆604Jul 5, 2026Updated 3 months ago
- Visualize and annotate genomic coverage with ggplot2☆273Jan 24, 2025Updated last year
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,497Updated this week