A tool to find sequencing data and metadata from public databases.
☆598Aug 13, 2024Updated last year
Alternatives and similar repositories for ffq
Users that are interested in ffq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧬 gget enables efficient querying of genomic reference databases☆1,123May 15, 2026Updated last week
- Download FASTQ files from SRA or ENA repositories.☆387May 16, 2026Updated last week
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆358Dec 9, 2025Updated 5 months ago
- genes and genomes at your fingertips☆412Mar 5, 2026Updated 2 months ago
- A grammar of graphics for comparative genomics☆763Feb 23, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Command line scientific data management tool☆230Nov 4, 2024Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆217Apr 24, 2026Updated 3 weeks ago
- Gene cluster comparison figure generator☆641Dec 22, 2025Updated 5 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆391Apr 4, 2026Updated last month
- parallel fastq-dump wrapper☆306Apr 26, 2023Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆884Jul 10, 2024Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,361Apr 24, 2026Updated 3 weeks ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆188Updated this week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A list of interesting genome browser and genome visualization programs☆1,076May 15, 2026Updated last week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆851May 2, 2026Updated 3 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆69Apr 30, 2026Updated 3 weeks ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆470Mar 20, 2026Updated 2 months ago
- seqfu - Sequece Fastx Utilities☆126Apr 17, 2026Updated last month
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆415Apr 1, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆250May 13, 2026Updated last week
- Align proteins to genomes with splicing and frameshift☆402Jan 5, 2026Updated 4 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Customizable workflows based on snakemake and python for the analysis of NGS data☆405Updated this week
- Near-optimal RNA-Seq quantification☆760Mar 16, 2026Updated 2 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Web application to explore the Sequence Read Archive.☆223Jul 17, 2025Updated 10 months ago
- Genomic interval operations on Pandas DataFrames☆191May 4, 2026Updated 2 weeks ago
- Collections of library structure and sequence of popular single cell genomic methods☆500Apr 16, 2026Updated last month
- Genome browser and variant annotation☆396May 12, 2026Updated last week
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- Performant Pythonic GenomicRanges☆494Apr 23, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆307Apr 10, 2026Updated last month
- Fast Gene Set Enrichment Analysis☆441Jan 2, 2026Updated 4 months ago
- an API for intersections of genomic data☆149Mar 12, 2026Updated 2 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195May 1, 2026Updated 3 weeks ago
- minimal example implementations for bioinformatics workflow managers☆289Oct 27, 2021Updated 4 years ago
- machine-readable file format for genomic library sequence and structure☆130Apr 3, 2026Updated last month