Alternatives and similar repositories for flo

Users that are interested in flo are comparing it to the libraries listed below

• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated last month
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 4 months ago
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆72Updated 3 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆90Updated last month
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆99Updated this week
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 4 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆126Updated 9 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 3 weeks ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆77Updated last year
• EichlerLab / pav
  Phased assembly variant caller
  ☆116Updated 6 months ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆115Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆95Updated 3 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆56Updated 2 years ago
• CshlSiepelLab / phast
  PHAST
  ☆73Updated last week
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆113Updated 2 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆91Updated last month
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆82Updated 4 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆45Updated 4 months ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆39Updated 5 years ago
• epi2me-labs / modbam2bed
  ☆48Updated 9 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆116Updated 10 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆114Updated 3 weeks ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆71Updated 3 years ago