Alternatives and similar repositories for flo

Users that are interested in flo are comparing it to the libraries listed below

• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆121Updated 4 months ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆95Updated 9 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆88Updated 4 years ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆109Updated 3 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆73Updated 3 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 8 months ago
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 9 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆120Updated 2 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆115Updated last week
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 4 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆118Updated 4 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆105Updated 4 years ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆148Updated last year
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 5 years ago
• epi2me-labs / modbam2bed
  ☆52Updated 4 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆117Updated 5 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆132Updated last year
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆94Updated 2 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆76Updated 3 years ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆116Updated 3 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆132Updated 2 months ago
• yjx1217 / LRSDAY
  LRSDAY: Long-read Sequencing Data Analysis for Yeasts
  ☆34Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆77Updated 4 years ago
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆108Updated last week