rjchallis / assembly-statsLinks
Assembly statistic visualisation
☆90Updated last year
Alternatives and similar repositories for assembly-stats
Users that are interested in assembly-stats are comparing it to the libraries listed below
Sorting:
- Synteny Imager☆63Updated 10 months ago
- Interactive quality assessment of genome assemblies☆100Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A list of software for pangenomics☆117Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Same species annotation lift over pipeline.☆97Updated last year
- Reference-free profiling of polyploid genomes☆117Updated 2 weeks ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆101Updated last week
- ☆44Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 7 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated 3 weeks ago
- Simple pileup-based variant caller☆90Updated 2 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆55Updated last week
- A tool for Racon polishing of miniasm assemblies☆76Updated 3 weeks ago
- source code for EVM☆112Updated 6 months ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 7 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆83Updated last year
- accurate LiftOver tool for new genome assemblies☆129Updated 10 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆110Updated last week