bcgsc / RAILS
πRAILS and ππ¨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling
β27Updated last year
Alternatives and similar repositories for RAILS:
Users that are interested in RAILS are comparing it to the libraries listed below
- Symmetric DUST for finding low-complexity regions in DNA sequencesβ37Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.β35Updated last week
- β28Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.β34Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeatsβ46Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.β37Updated 5 years ago
- Segmental Duplication Assembler (SDA).β44Updated last year
- genomic alignment similarity search toolβ18Updated 10 months ago
- β26Updated 5 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAPβ38Updated 2 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-readsβ22Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicityβ66Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assembliesβ24Updated 4 years ago
- βοΈ Genome assembly polishing & SNV detectionβ68Updated last month
- Minimizer-based assembly scaffolding and mapping using long readsβ37Updated 5 months ago
- Compute N50/NG50 and auN/auNGβ31Updated last year
- Improved Phased Assemblerβ28Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systemsβ27Updated 2 years ago
- β32Updated 4 years ago
- FastK based version of Merquryβ23Updated 2 weeks ago
- β32Updated this week
- SV genotyping with long readsβ40Updated last year
- Assembly by Reduced Complexity (ARC)β41Updated 9 years ago
- A tool for recovering synteny blocks from multiple alignmentβ30Updated 3 years ago
- Find Unique genomic Regionsβ29Updated last week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA filesβ33Updated 2 years ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.β16Updated 11 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)β48Updated 5 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.β44Updated 4 years ago
- calling SVs from Blasr contig level alignmentsβ54Updated 7 years ago