tanghaibao / allhicLinks
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
☆60Updated 5 months ago
Alternatives and similar repositories for allhic
Users that are interested in allhic are comparing it to the libraries listed below
Sorting:
- A pipeline for isoseq☆23Updated 6 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- ☆44Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆56Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆77Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆74Updated last year
- PacBio BAM toolkit☆43Updated 3 months ago
- Structural variant caller☆54Updated 3 years ago
- TGS scaffolding☆46Updated 3 years ago
- Algorithm to detect germline and de novo transposon insertions☆28Updated last month
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated this week
- SRF: Satellite Repeat Finder☆96Updated last year
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated last month
- ☆42Updated last year
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated 2 years ago
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆42Updated 7 months ago
- ☆30Updated 9 months ago
- Variant annotation and merging pipeline☆34Updated this week