tanghaibao / allhic
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
☆59Updated 2 months ago
Alternatives and similar repositories for allhic:
Users that are interested in allhic are comparing it to the libraries listed below
- ☆43Updated 8 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Error correction of ONT transcript reads☆59Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆65Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆47Updated last year
- PacBio BAM toolkit☆40Updated 2 weeks ago
- A pipeline for isoseq☆23Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- De novo annotation of young retrotransposons☆48Updated 2 years ago
- perSVade: personalized Structural Variation detection☆38Updated 2 weeks ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 4 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- ☆76Updated 4 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆38Updated 4 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- ☆76Updated 2 weeks ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- ☆42Updated 10 months ago
- Simple pileup-based variant caller☆88Updated 2 weeks ago
- Conditional Reciprocal Best Blast☆42Updated 7 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A tool for evaluate long-read de novo assembly results☆43Updated 6 months ago