rhysf / SynimaLinks
Synteny Imager
☆64Updated 2 months ago
Alternatives and similar repositories for Synima
Users that are interested in Synima are comparing it to the libraries listed below
Sorting:
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- k-mer learning materials☆80Updated 7 months ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- ☆44Updated 8 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆73Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆44Updated 3 months ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- Assembly statistic visualisation☆90Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆89Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆58Updated 3 weeks ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated 10 months ago
- Best practices and workflow for genome annotation☆78Updated 5 months ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆26Updated 5 years ago
- ☆66Updated last month
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 9 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- ☆26Updated 7 months ago