rhysf / SynimaLinks
Synteny Imager
☆64Updated last month
Alternatives and similar repositories for Synima
Users that are interested in Synima are comparing it to the libraries listed below
Sorting:
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- ☆44Updated 8 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆73Updated 4 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- Assembly statistic visualisation☆90Updated last year
- k-mer learning materials☆74Updated 7 months ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆89Updated last year
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆26Updated 4 years ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆77Updated 11 months ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 8 months ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆72Updated 2 weeks ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- Pipeline to convert a haploid assembly into diploid☆103Updated 7 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆44Updated 2 months ago
- ☆66Updated 2 weeks ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated 2 weeks ago
- ☆32Updated 4 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆58Updated this week
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆85Updated 10 months ago