gtamazian / chromosomer
A reference-assisted assembly tool for producing draft chromosome sequences.
☆41Updated 7 months ago
Alternatives and similar repositories for chromosomer:
Users that are interested in chromosomer are comparing it to the libraries listed below
- ☆43Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 4 months ago
- ☆76Updated 4 years ago
- Genome Annotation Pipeline☆35Updated 6 months ago
- finshingTool☆55Updated 8 years ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆38Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆52Updated last year
- Synteny Imager☆60Updated 5 months ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- ☆32Updated 4 years ago
- A tool for evaluate long-read de novo assembly results☆43Updated 5 months ago
- ☆76Updated 4 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 4 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated 3 weeks ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆33Updated 3 months ago
- Conditional Reciprocal Best Blast☆41Updated 7 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆43Updated last year
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- ☆61Updated this week
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 3 months ago
- A program to call variants from genome alignment☆78Updated 11 months ago