The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
☆80Oct 12, 2018Updated 7 years ago
Alternatives and similar repositories for LACHESIS
Users that are interested in LACHESIS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 3D de novo assembly (3D DNA) pipeline☆229Nov 29, 2023Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆443Mar 28, 2024Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆218Jun 30, 2026Updated last month
- An easy way to run BioNano genomic analysis☆27Apr 9, 2021Updated 5 years ago
- haplotypic duplication identification tool☆295Oct 30, 2025Updated 9 months ago
- test repository☆29Jul 6, 2023Updated 3 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆925Updated this week
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Sep 11, 2020Updated 5 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆488Aug 31, 2025Updated 11 months ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- A single molecule sequence assembler for genomes large and small.☆707Jun 18, 2026Updated last month
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Jan 3, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and accurate de novo assembler for long reads☆405May 10, 2024Updated 2 years ago
- Same species annotation lift over pipeline.☆99Jul 21, 2023Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Ultra-fast de novo assembler using long noisy reads☆137Feb 24, 2021Updated 5 years ago
- ☆15Nov 11, 2019Updated 6 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- PASA software☆204Feb 12, 2025Updated last year
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast and accurately polish the genome generated by long reads.☆244Jan 9, 2025Updated last year
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Jan 16, 2024Updated 2 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆186Jul 30, 2026Updated 2 weeks ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 6 years ago
- ☆12Jun 7, 2024Updated 2 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 7 months ago