pirovc / metametaLinks
☆23Updated 6 years ago
Alternatives and similar repositories for metameta
Users that are interested in metameta are comparing it to the libraries listed below
Sorting:
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 6 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- simple and not slow ORF caller☆21Updated 2 months ago
- Find Unique genomic Regions☆32Updated last week
- OPAL: Open-community Profiling Assessment tooL☆30Updated 2 weeks ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 2 weeks ago
- Strain Resolution ON Graphs☆50Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Updated 8 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 7 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 2 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago