☆23Sep 27, 2019Updated 6 years ago
Alternatives and similar repositories for metameta
Users that are interested in metameta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 5 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Apr 24, 2026Updated last week
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Apr 27, 2026Updated last week
- ☆84Sep 13, 2023Updated 2 years ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated last month
- Fast metagenome analysis toolkit☆27Sep 3, 2024Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆101Feb 10, 2026Updated 2 months ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- SHallow shOtGUN profiler☆52Mar 4, 2022Updated 4 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 10 months ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 8 years ago
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 7 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Jan 16, 2024Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- ☆10Feb 28, 2018Updated 8 years ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 6 months ago
- ☆18Apr 6, 2022Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 9 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆104Apr 23, 2026Updated last week
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22Apr 9, 2026Updated 3 weeks ago
- Visualization of the pan-genome output by panX☆68Jun 16, 2025Updated 10 months ago
- Biobakery formulae for the Homebrew package manager☆11Sep 9, 2019Updated 6 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆52Mar 26, 2026Updated last month
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆214Apr 24, 2026Updated last week
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆34Mar 4, 2026Updated 2 months ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆14Mar 10, 2020Updated 6 years ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Jun 23, 2022Updated 3 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago