pirovc / metameta
☆23Updated 4 years ago
Related projects: ⓘ
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 5 months ago
- Output FASTQ summary statistics in JSON format☆29Updated last year
- OPAL: Open-community Profiling Assessment tooL☆26Updated 3 weeks ago
- A method of assessing sequence complexity based on kmer frequencies☆26Updated 6 years ago
- TAXnomic Profile Aggregation and STAndardisation☆33Updated last month
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- Python package for common tasks in bioinformatic.☆13Updated 11 months ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆22Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 2 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated this week
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- ☆18Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆19Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes