metabaRfactory / metabaRLinks
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
☆16Updated 2 months ago
Alternatives and similar repositories for metabaR
Users that are interested in metabaR are comparing it to the libraries listed below
Sorting:
- Look Up Guild Information for Fungi in R☆22Updated 7 months ago
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last month
- Various functions for analysis of microbial community data☆46Updated 3 weeks ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 7 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆23Updated 3 months ago
- creating reference databases for amplicon sequencing☆40Updated 2 weeks ago
- eDNA metabarcoding pipeline☆39Updated last month
- A web app for environmental DNA metabarcoding analysis☆11Updated 3 years ago
- A python package to query different databases of boldsystems.org☆32Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆31Updated 2 months ago
- functions for analyzing phyloseq data☆28Updated 8 months ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last month
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Updated 11 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- FUNGuild: parsing OTUs into functional guilds☆120Updated last year
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 2 weeks ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated 2 years ago
- dada2 formatted nifH database☆12Updated last year
- Miscellaneous functions for metagenomic analysis.☆51Updated this week
- ☆12Updated last year
- ☆21Updated 2 years ago