metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
☆17Jul 31, 2025Updated 7 months ago
Alternatives and similar repositories for metabaR
Users that are interested in metabaR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 6 months ago
- ☆23Feb 23, 2023Updated 3 years ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 2 years ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- eDNA metabarcoding pipeline☆43Mar 11, 2026Updated last week
- creating reference databases for amplicon sequencing☆48Jan 13, 2026Updated 2 months ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- Formation continue sur la FAIRisation du code informatique☆10Jun 15, 2022Updated 3 years ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- A repository for my work on rCRUX☆12Jun 21, 2024Updated last year
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆26Jan 5, 2026Updated 2 months ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆33Updated this week
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 2 months ago
- ☆17Updated this week
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 2 years ago
- Communities Assembly by Traits: Individuals and beyond☆13Nov 5, 2024Updated last year
- Model and predicts species accounting for their known trophic interaction network☆18Jun 24, 2024Updated last year
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 8 months ago
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated 9 months ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated last year
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- R package for downstream analysis for anacapa eDNA pipeline☆23Dec 10, 2021Updated 4 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- Transform files to the microtable object with microeco package☆28Feb 13, 2026Updated last month
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- chloroplast genome assembly using long reads data☆15Jul 8, 2025Updated 8 months ago
- Coprolite host Identification pipeline☆12Mar 7, 2026Updated 2 weeks ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- Reproducible Reporting with R (R3) training materials for marine ecosystem indicators☆13Sep 7, 2021Updated 4 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 4 months ago
- Versioned database that includes growth form information for the world's land plants, currently >140,000 species☆19Feb 17, 2019Updated 7 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated last month
- microbiome data simulation package☆22Oct 2, 2025Updated 5 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 5 months ago