tapj / biotyperLinks
an R package to biotype a community
☆14Updated 3 years ago
Alternatives and similar repositories for biotyper
Users that are interested in biotyper are comparing it to the libraries listed below
Sorting:
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆15Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆38Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Updated 7 years ago
- ☆15Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- ☆27Updated 2 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- ☆20Updated 4 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- R shiny app for interactive microbiome analysis☆55Updated 3 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 2 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 2 months ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Guangchuang Yu's CV☆43Updated 9 months ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 7 years ago
- Visualization tool for genetic reassortment☆21Updated 5 months ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- R package for downstream Microbiome analysis☆30Updated 9 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆22Updated last year
- ☆31Updated 4 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 8 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 3 months ago