wejlab / MetaScopeLinks
An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
☆19Updated this week
Alternatives and similar repositories for MetaScope
Users that are interested in MetaScope are comparing it to the libraries listed below
Sorting:
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 weeks ago
- STAMPS 2018 course☆15Updated 7 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- ☆21Updated last year
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- An Amazing Shiny App☆17Updated 3 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- Linear Decomposition Model☆24Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated 10 months ago
- Easy to define segments in y-axis for 'ggplot2'.☆28Updated 5 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 2 weeks ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Metagenomics calibration R package☆20Updated 3 years ago
- fastqcr: Quality Control of Sequencing Data☆75Updated 2 years ago
- flexible pipelines for scalable secretome prediction, R package☆12Updated 6 years ago
- Drawing 'dendrogram' using 'ggtree'☆13Updated 4 months ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Updated 6 months ago
- ☆27Updated last year
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- ☆19Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago