Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples
☆20Nov 23, 2024Updated last year
Alternatives and similar repositories for AutoTax
Users that are interested in AutoTax are comparing it to the libraries listed below
Sorting:
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Dec 22, 2025Updated 2 months ago
- A manually curated database of human gut metabolic modules.☆17Jul 27, 2018Updated 7 years ago
- Small collection of random useful perl scripts☆21Jun 23, 2014Updated 11 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Mar 6, 2024Updated last year
- Miscellaneous functions for metagenomic analysis.☆53Feb 20, 2026Updated last week
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Jun 14, 2025Updated 8 months ago
- Software implementation for tensor-tensor m-product☆14Dec 14, 2023Updated 2 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 4 years ago
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated 8 months ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 5 years ago
- ☆15Sep 26, 2019Updated 6 years ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Phylogenetic placement and downstream analysis☆89Jan 28, 2026Updated last month
- Tools for visualising microbial community amplicon data☆72Nov 3, 2025Updated 4 months ago
- ☆20Updated this week
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆115Nov 20, 2023Updated 2 years ago
- ☆42Nov 20, 2017Updated 8 years ago
- Rarefaction scripts☆17Jan 30, 2026Updated last month
- ☆15Aug 14, 2020Updated 5 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Feb 13, 2023Updated 3 years ago
- A toolkit to validate and consolidate antimicrobial resistance gene databases☆20Apr 21, 2023Updated 2 years ago
- Integrated Network Analysis Pipeline☆18Dec 19, 2024Updated last year
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated last year
- Various functions for analysis of microbial community data☆47Oct 1, 2025Updated 5 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Nov 9, 2022Updated 3 years ago
- Ordination lectures for Ecological Methods in Oulu☆22Aug 1, 2024Updated last year
- ☆22Oct 9, 2025Updated 4 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Feb 6, 2023Updated 3 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Feb 12, 2026Updated 2 weeks ago
- Metagenomics-related extended functionalities to samtools☆22Jul 6, 2023Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Oct 24, 2025Updated 4 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Aug 10, 2025Updated 6 months ago