Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples
☆20Nov 23, 2024Updated last year
Alternatives and similar repositories for AutoTax
Users that are interested in AutoTax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Small collection of random useful perl scripts☆21Jun 23, 2014Updated 12 years ago
- A manually curated database of human gut metabolic modules.☆18Jul 27, 2018Updated 7 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated this week
- ☆21Jun 27, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆51Mar 6, 2024Updated 2 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- Miscellaneous functions for metagenomic analysis.☆54May 14, 2026Updated last month
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆116Nov 20, 2023Updated 2 years ago
- Tools for visualising microbial community amplicon data☆73Nov 3, 2025Updated 8 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated last year
- ☆14Sep 26, 2019Updated 6 years ago
- Rarefaction scripts☆17Jan 30, 2026Updated 5 months ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- Phylogenetic placement and downstream analysis☆95Jan 28, 2026Updated 5 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R shiny app for interactive microbiome analysis☆56Jun 5, 2025Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Oct 24, 2025Updated 8 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Jun 19, 2026Updated 2 weeks ago
- Software implementation for tensor-tensor m-product☆14Dec 14, 2023Updated 2 years ago
- ☆14Dec 12, 2017Updated 8 years ago
- I've always wondered why there are so few games in R.☆13Nov 21, 2022Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆22Jul 6, 2023Updated 2 years ago
- ☆44Nov 20, 2017Updated 8 years ago
- A toolkit to validate and consolidate antimicrobial resistance gene databases☆20Apr 21, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ley Lab MetaGenome Profiler DataBase generator☆48Nov 9, 2022Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Feb 6, 2023Updated 3 years ago
- ☆26Apr 20, 2023Updated 3 years ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated last year
- ☆30Dec 22, 2023Updated 2 years ago
- ☆15Aug 14, 2020Updated 5 years ago
- ☆36Nov 11, 2022Updated 3 years ago